Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq57130 167 5e-39
seq1726173 145 1e-32
seq846665 123 5e-26
seq1110577 100 5e-19
seq879309 77.0 6e-12
seq616361 77.0 6e-12
>seq57130
Length=3464
Score = 167 bits (184), Expect = 5e-39
Identities = 177/232 (76%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 492 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 551
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227
| ||||| | |||| | || ||| ||| | | |||||||||||| ||||
Sbjct 552 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 608
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| |
Sbjct 609 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 668
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 669 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 720
>seq1726173
Length=314
Score = 145 bits (160), Expect = 1e-32
Identities = 156/205 (76%), Gaps = 6/205 (3%)
Strand=Plus/Plus
Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197
||||||| |||||||||| |||||||||||| ||||| | |||| | || ||
Sbjct 4 TGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGG 63
Query 198 AAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCT 254
| ||| | | |||||||||||| ||||| | || ||||| | || | | |||
Sbjct 64 A---CATTGGTCCTCGAGTGCAAAGGCAGAAGGGAGCTTCACTGCAAGACTCACCCGTCG 120
Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314
|| || |||||||||||| |||| ||||||| |||||| || ||||| |||||||||||
Sbjct 121 AGTAGAGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCA 180
Query 315 ACGGATAAAAGCTACCCTGGGGATA 339
||||||||||| ||| || ||||||
Sbjct 181 ACGGATAAAAGTTACTCTAGGGATA 205
>seq846665
Length=446
Score = 123 bits (136), Expect = 5e-26
Identities = 116/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
|||||||| | | ||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct 299 GGACAGTGCCTGATGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGTAACGGAGGCG 358
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231
||||||| | |||||||| ||| || || || | | |||| || ||| ||||| |
Sbjct 359 CCCAAAGGTTCCCTCAGCCTGGTTGCGAATCAGGTGGTGAGTGTAAGTGCACAAGGGAGC 418
Query 232 TTGACTGCGACACCCTCAAGTCTAGCAG 259
||||||| || || |||||| | |||
Sbjct 419 TTGACTGTGAGACTGACAAGTCGAACAG 446
>seq1110577
Length=310
Score = 100 bits (110), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| ||||| |||| |||||||||
Sbjct 207 GGGACAGTCTCAGGTAGACAGTTTTTATGGGGCGTAGGCCTCTCAAAAGGTAACGGAGAT 148
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCAT--GCGCAC-AGTGCAAAGGCAAAAGG 227
| ||||| | |||| | || ||| ||| | || | |||||||||||| | |
Sbjct 147 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTGCTCGAGTGCAAAGGCATATGT 91
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | || | | ||| | | | ||||||||||| |||| |||||| |
Sbjct 90 GAGCTTGACTGCAAGACTCACCCGTCGAACGGAGACGAAAGTCGACCTTAGTGATCCCAC 31
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACG 317
|||| || ||||| ||||||||||| |||
Sbjct 30 GGTGTCGAGTGGAAGGGCCGTCGCTCAACG 1
>seq879309
Length=873
Score = 77.0 bits (84), Expect = 6e-12
Identities = 136/197 (69%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 679 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 738
Query 170 CGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || ||| ||| | ||| | || || | || || | |||
Sbjct 739 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTG-----AGCGTAATGGTATAAGCC 793
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 794 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 853
Query 289 GTGCTGAATGGAACGGC 305
|| | | ||||| |||
Sbjct 854 GTCCCGTGTGGAAGGGC 870
>seq616361
Length=264
Score = 77.0 bits (84), Expect = 6e-12
Identities = 81/107 (76%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292
|||||| || ||| | ||| | ||| |||||||||||| | || |||||||| || |
Sbjct 250 TGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCC 191
Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 190 CGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 964535841920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |