Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq57130 167 5e-39 seq1726173 145 1e-32 seq846665 123 5e-26 seq1110577 100 5e-19 seq879309 77.0 6e-12 seq616361 77.0 6e-12 >seq57130 Length=3464 Score = 167 bits (184), Expect = 5e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 492 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 551 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 552 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 608 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 609 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 668 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 669 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 720 >seq1726173 Length=314 Score = 145 bits (160), Expect = 1e-32 Identities = 156/205 (76%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 ||||||| |||||||||| |||||||||||| ||||| | |||| | || || Sbjct 4 TGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGG 63 Query 198 AAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCT 254 | ||| | | |||||||||||| ||||| | || ||||| | || | | ||| Sbjct 64 A---CATTGGTCCTCGAGTGCAAAGGCAGAAGGGAGCTTCACTGCAAGACTCACCCGTCG 120 Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 || || |||||||||||| |||| ||||||| |||||| || ||||| ||||||||||| Sbjct 121 AGTAGAGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCA 180 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| ||| || |||||| Sbjct 181 ACGGATAAAAGTTACTCTAGGGATA 205 >seq846665 Length=446 Score = 123 bits (136), Expect = 5e-26 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||| | | ||| |||||||||||||||||||||||| |||| |||||||||||| Sbjct 299 GGACAGTGCCTGATGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGTAACGGAGGCG 358 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||||| | |||||||| ||| || || || | | |||| || ||| ||||| | Sbjct 359 CCCAAAGGTTCCCTCAGCCTGGTTGCGAATCAGGTGGTGAGTGTAAGTGCACAAGGGAGC 418 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAG 259 ||||||| || || |||||| | ||| Sbjct 419 TTGACTGTGAGACTGACAAGTCGAACAG 446 >seq1110577 Length=310 Score = 100 bits (110), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| ||||| |||| ||||||||| Sbjct 207 GGGACAGTCTCAGGTAGACAGTTTTTATGGGGCGTAGGCCTCTCAAAAGGTAACGGAGAT 148 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCAT--GCGCAC-AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | || | |||||||||||| | | Sbjct 147 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTGCTCGAGTGCAAAGGCATATGT 91 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| | | | ||||||||||| |||| |||||| | Sbjct 90 GAGCTTGACTGCAAGACTCACCCGTCGAACGGAGACGAAAGTCGACCTTAGTGATCCCAC 31 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACG 317 |||| || ||||| ||||||||||| ||| Sbjct 30 GGTGTCGAGTGGAAGGGCCGTCGCTCAACG 1 >seq879309 Length=873 Score = 77.0 bits (84), Expect = 6e-12 Identities = 136/197 (69%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 679 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 738 Query 170 CGCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || ||| ||| | ||| | || || | || || | ||| Sbjct 739 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTG-----AGCGTAATGGTATAAGCC 793 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 794 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 853 Query 289 GTGCTGAATGGAACGGC 305 || | | ||||| ||| Sbjct 854 GTCCCGTGTGGAAGGGC 870 >seq616361 Length=264 Score = 77.0 bits (84), Expect = 6e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| || | Sbjct 250 TGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCC 191 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 190 CGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 964535841920