Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq846665 127 2e-27 seq879309 107 2e-21 seq57130 107 2e-21 seq1811529 96.9 4e-18 seq739250 93.3 5e-17 seq1712662 87.8 2e-15 seq779774 87.8 2e-15 seq1784692 84.2 2e-14 seq137751 84.2 2e-14 seq756768 78.8 1e-12 seq1749024 77.0 3e-12 seq1745055 75.2 1e-11 seq1759849 73.4 4e-11 seq39941 73.4 4e-11 >seq846665 Length=446 Score = 127 bits (140), Expect = 2e-27 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| |||| ||||||| || || | ||||||||| | Sbjct 144 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCACCG 85 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || ||| ||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 84 AGTTCATGGTGGAGACAGTAGGGAAATCGTTACTCCATTCGTGCAGGTCGGAACTTACCC 25 Query 143 GACAAGGAATTTCGCTACCTTAGG 166 |||||||||||||||||||||||| Sbjct 24 GACAAGGAATTTCGCTACCTTAGG 1 >seq879309 Length=873 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 535 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 476 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 475 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 416 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 415 GACAAGGAATTTCGCTACCTTAGGACAGTTA 385 >seq57130 Length=3464 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 333 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 274 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 273 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 215 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 214 ACAAGGAATTTCGCTACCTTAGGACCGTTA 185 >seq1811529 Length=469 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 450 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 391 Query 173 A 173 | Sbjct 390 A 390 >seq739250 Length=206 Score = 93.3 bits (102), Expect = 5e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 49 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTTCCTTAGGACCGTT 108 Query 173 A 173 | Sbjct 109 A 109 >seq1712662 Length=267 Score = 87.8 bits (96), Expect = 2e-15 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 123 GTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 GTGCTGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 57 >seq779774 Length=2835 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||||||| ||||| |||||||| |||||||||| ||||||||||||||||||| Sbjct 2299 TACACCTTTCGTGCGGGTCGAAACTTACCTGACAAGGAATCTCGCTACCTTAGGACCGTT 2240 Query 173 A 173 | Sbjct 2239 A 2239 >seq1784692 Length=254 Score = 84.2 bits (92), Expect = 2e-14 Identities = 93/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || ||||||||| || | ||||||||| | | || | | ||||||| Sbjct 144 GGTACTCCACATCTTCACGGAGTATTCAATTTCACCGGGTCCATGTTGGAGACAGCGGGG 85 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 | |||||||||||||||||| |||| |||||||||||||||||||||| | Sbjct 84 CAGTCGTTTCACCATTCGTGCAGGTCGCTCCTTATGCGACAAGGAATTTCGCTACCTTTG 25 Query 166 GACCGTTA 173 ||| |||| Sbjct 24 GACAGTTA 17 >seq137751 Length=1188 Score = 84.2 bits (92), Expect = 2e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 128 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1143 >seq756768 Length=12766 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||| ||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 627 TACGCCTTTCATGCGGGTCGGAACTTACTTGACAAGGAATTTCGCCACCTTAGGACCGTT 686 Query 173 A 173 | Sbjct 687 A 687 >seq1749024 Length=2811 Score = 77.0 bits (84), Expect = 3e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||| ||| || ||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 2026 CCTTTCTTGCGGGCCGGAACTTACCCGACAAGGAATTTCTCTACCTTTGGACCGTTA 1970 >seq1745055 Length=6470 Score = 75.2 bits (82), Expect = 1e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1263 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1311 >seq1759849 Length=566 Score = 73.4 bits (80), Expect = 4e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| ||| || || ||||||||||||||||||||||||||| ||||||||||| Sbjct 107 TTCCTGCGGGCCGAAACTTACCCGACAAGGAATTTCGCTACATTAGGACCGTT 159 >seq39941 Length=7243 Score = 73.4 bits (80), Expect = 4e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||| || |||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 3273 TACGCCTTTCGCGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACGTTAG 3221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537560555580