Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq846665 127 2e-27
seq879309 107 2e-21
seq57130 107 2e-21
seq1811529 96.9 4e-18
seq739250 93.3 5e-17
seq1712662 87.8 2e-15
seq779774 87.8 2e-15
seq1784692 84.2 2e-14
seq137751 84.2 2e-14
seq756768 78.8 1e-12
seq1749024 77.0 3e-12
seq1745055 75.2 1e-11
seq1759849 73.4 4e-11
seq39941 73.4 4e-11
>seq846665
Length=446
Score = 127 bits (140), Expect = 2e-27
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| ||||| ||| |||| ||||||| || || | ||||||||| |
Sbjct 144 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCACCG 85
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
|| ||| ||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 84 AGTTCATGGTGGAGACAGTAGGGAAATCGTTACTCCATTCGTGCAGGTCGGAACTTACCC 25
Query 143 GACAAGGAATTTCGCTACCTTAGG 166
||||||||||||||||||||||||
Sbjct 24 GACAAGGAATTTCGCTACCTTAGG 1
>seq879309
Length=873
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 535 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 476
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 475 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 416
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 415 GACAAGGAATTTCGCTACCTTAGGACAGTTA 385
>seq57130
Length=3464
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 333 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 274
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 273 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 215
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 214 ACAAGGAATTTCGCTACCTTAGGACCGTTA 185
>seq1811529
Length=469
Score = 96.9 bits (106), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 391
Query 173 A 173
|
Sbjct 390 A 390
>seq739250
Length=206
Score = 93.3 bits (102), Expect = 5e-17
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 49 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTTCCTTAGGACCGTT 108
Query 173 A 173
|
Sbjct 109 A 109
>seq1712662
Length=267
Score = 87.8 bits (96), Expect = 2e-15
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 123 GTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 GTGCTGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 57
>seq779774
Length=2835
Score = 87.8 bits (96), Expect = 2e-15
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||| ||||||| ||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 2299 TACACCTTTCGTGCGGGTCGAAACTTACCTGACAAGGAATCTCGCTACCTTAGGACCGTT 2240
Query 173 A 173
|
Sbjct 2239 A 2239
>seq1784692
Length=254
Score = 84.2 bits (92), Expect = 2e-14
Identities = 93/128 (73%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105
|||| || ||||||||| || | ||||||||| | | || | | |||||||
Sbjct 144 GGTACTCCACATCTTCACGGAGTATTCAATTTCACCGGGTCCATGTTGGAGACAGCGGGG 85
Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165
| |||||||||||||||||| |||| |||||||||||||||||||||| |
Sbjct 84 CAGTCGTTTCACCATTCGTGCAGGTCGCTCCTTATGCGACAAGGAATTTCGCTACCTTTG 25
Query 166 GACCGTTA 173
||| ||||
Sbjct 24 GACAGTTA 17
>seq137751
Length=1188
Score = 84.2 bits (92), Expect = 2e-14
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Minus
Query 128 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1143
>seq756768
Length=12766
Score = 78.8 bits (86), Expect = 1e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 627 TACGCCTTTCATGCGGGTCGGAACTTACTTGACAAGGAATTTCGCCACCTTAGGACCGTT 686
Query 173 A 173
|
Sbjct 687 A 687
>seq1749024
Length=2811
Score = 77.0 bits (84), Expect = 3e-12
Identities = 51/57 (89%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| ||| ||| || ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 2026 CCTTTCTTGCGGGCCGGAACTTACCCGACAAGGAATTTCTCTACCTTTGGACCGTTA 1970
>seq1745055
Length=6470
Score = 75.2 bits (82), Expect = 1e-11
Identities = 46/49 (94%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161
||| || ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1263 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1311
>seq1759849
Length=566
Score = 73.4 bits (80), Expect = 4e-11
Identities = 48/53 (91%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| ||| || || ||||||||||||||||||||||||||| |||||||||||
Sbjct 107 TTCCTGCGGGCCGAAACTTACCCGACAAGGAATTTCGCTACATTAGGACCGTT 159
>seq39941
Length=7243
Score = 73.4 bits (80), Expect = 4e-11
Identities = 48/53 (91%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165
||| || |||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct 3273 TACGCCTTTCGCGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACGTTAG 3221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537560555580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |