Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq229976 75.2 7e-12 seq53245 75.2 7e-12 seq36581 75.2 7e-12 seq598764 71.6 8e-11 >seq229976 Length=1330 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 1274 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 1217 Query 122 GCT 124 ||| Sbjct 1216 GCT 1214 >seq53245 Length=3146 Score = 75.2 bits (82), Expect = 7e-12 Identities = 48/51 (94%), Gaps = 1/51 (2%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAAT 112 |||| ||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 22 TTCAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT 71 >seq36581 Length=4089 Score = 75.2 bits (82), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 3/70 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 78 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 22 Query 99 GGCAGGGACG 108 |||||||||| Sbjct 21 GGCAGGGACG 12 >seq598764 Length=223 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| | ||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 155 TTCAATTGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 212 Query 122 GCT 124 ||| Sbjct 213 GCT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295672055600