Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq1769377 183 6e-44
seq1497236 172 1e-40
seq748334 172 1e-40
seq1022886 170 4e-40
seq656910 161 2e-37
seq614993 161 2e-37
seq1484266 159 7e-37
seq854589 136 8e-30
seq771549 132 9e-29
seq748961 132 9e-29
seq128944 114 3e-23
seq142307 107 4e-21
seq323673 104 5e-20
seq163296 100 6e-19
seq869198 98.7 2e-18
seq757116 80.6 5e-13
seq3719 78.8 2e-12
seq1743223 77.0 6e-12
seq793278 77.0 6e-12
>seq1769377
Length=530
Score = 183 bits (202), Expect = 6e-44
Identities = 228/305 (75%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGT-GCAATATCCCCCACTGCTGCCTCCCGTA 59
||| | ||| | ||||| |||| |||||||| |||| || ||||||||||||||||||||
Sbjct 47 GGCATTGCTCCGTCAGGCTTTCGCCCATTGTAGCAA-ATTCCCCACTGCTGCCTCCCGTA 105
Query 60 GGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGA 119
|||||||||||||||||||||||||| ||||| | ||| |||||| | | ||||| ||
Sbjct 106 GGAGTCTGGGCCGTGTCTCAGTCCCATTGTGGTTGATCATCCTCTCGGACTAGCTACTGA 165
Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTC 179
|| || |||||| |||||| ||||||||||| |||||| | ||||||||| || ||
Sbjct 166 TCATCTCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTG 225
Query 180 AGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
||| ||| || | ||| ||||| || || | |||||||||
Sbjct 226 GGCG----GGCTT--CTC-----CTTTTGC--TCCTC--ACCCTACGGGGTATTAGCAAC 270
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
| |||||| ||| ||| ||| || |||||||| | || ||||||||||||| ||
Sbjct 271 CATTTCCAGTTGTTGTTCACCTCCCAAGGGCAGGTT-TTTACTCGTTACTCACCCGTTCG 329
Query 300 CCACT 304
|||||
Sbjct 330 CCACT 334
>seq1497236
Length=308
Score = 172 bits (190), Expect = 1e-40
Identities = 134/160 (84%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||||||||||| || | |||||||||||| || |||||||||||||||||||||
Sbjct 102 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAAAATTCCCCACTGCTGCCTCCCGTAG 161
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| |||
Sbjct 162 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCAGCCTCTCAGACCAGCTAGGGAT 221
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||||| || |||| || ||| | |||| |||| ||||||
Sbjct 222 CGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATC 261
>seq748334
Length=307
Score = 172 bits (190), Expect = 1e-40
Identities = 122/140 (87%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||||| ||||||||||| || | |||||||||||| || |||||||||||||||||||||
Sbjct 168 GGCGTTGCTGCATCAGGCTTCCGCCCATTGTGCAAAATTCCCCACTGCTGCCTCCCGTAG 227
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 228 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 287
Query 121 CGTCGGCTTGGTGGGCTATT 140
| ||| |||||| ||||||
Sbjct 288 CATCGCCTTGGTAAGCTATT 307
>seq1022886
Length=529
Score = 170 bits (188), Expect = 4e-40
Identities = 144/177 (81%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 2 GCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGG 61
|||| ||| | ||||| |||| ||||| | || || |||||| |||||||||||||||
Sbjct 319 GCGTTGCTCCGTCAGGCTTTCGATCATTGCGGAAAATTCCCCACAGCTGCCTCCCGTAGG 378
Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121
|||||||||||||||||||||| | |||| | | ||| ||||||| || ||||| ||||
Sbjct 379 AGTCTGGGCCGTGTCTCAGTCCAAGTGTGTCTGATCATCCTCTCAAACCAGCTACTGATC 438
Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178
||| |||||| |||||| ||||||||||| |||||| | ||||||||| || ||
Sbjct 439 ATCGCCTTGGTAAGCTATTCCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTT 495
>seq656910
Length=211
Score = 161 bits (178), Expect = 2e-37
Identities = 121/142 (85%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 37 ATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTT 96
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 3 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 62
Query 97 CAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156
|| |||||| | || ||||| |||| ||| |||||| ||||| ||||||||||| ||
Sbjct 63 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATCGCCTCACCAACTAGCT 122
Query 157 AATCGGCCGCGAGCCCATCTTT 178
|||| | ||||||||| || ||
Sbjct 123 AATCAGACGCGAGCCCCTCCTT 144
>seq614993
Length=211
Score = 161 bits (178), Expect = 2e-37
Identities = 127/152 (84%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||| ||||||||||||||
Sbjct 60 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCGCTGCCTCCCGTAG 119
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 120 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 179
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACT 152
| ||| |||||| |||||| ||||||||||
Sbjct 180 CATCGCCTTGGTAAGCTATTGCCTCACCAACT 211
>seq1484266
Length=243
Score = 159 bits (176), Expect = 7e-37
Identities = 123/146 (84%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| ||||||| |||| ||||||| | || || |||||| |||||||||||||||||||
Sbjct 98 GCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCACTGCCTCCCGTAGGAGTCT 157
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||| |||
Sbjct 158 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGC 217
Query 127 CTTGGTGGGCTATTATCTCACCAACT 152
|||||| |||||| ||||||||||
Sbjct 218 CTTGGTAAGCTATTGCCTCACCAACT 243
>seq854589
Length=2248
Score = 136 bits (150), Expect = 8e-30
Identities = 122/153 (80%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 1848 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 1907
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| || || || |||| ||| | ||
Sbjct 1908 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 1967
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 1968 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 2000
>seq771549
Length=6473
Score = 132 bits (146), Expect = 9e-29
Identities = 132/172 (77%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| | ||||| |||| |||| | || || |||||||||||||||| |||||||||
Sbjct 3156 GCTCCGTCAGGCTTTCGCCCANNNCGGAAAATTCCCCACTGCTGCCTCCTTTAGGAGTCT 3215
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||| | ||||| ||||| | | ||| | ||| |||||||| || |||| |||| |||
Sbjct 3216 GGGTCATGTCTTAGTCCTAGTATGGTTGATCATCCTCTCAGACCATCTACTGATCATCGC 3275
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178
|||| | |||||| |||||||| || |||||||| || |||||| || ||
Sbjct 3276 CTTGCTAAGCTATTGCCTCACCAAGTAGCTAATCGGACGGGAGCCCCTCCTT 3327
>seq748961
Length=209
Score = 132 bits (146), Expect = 9e-29
Identities = 99/116 (85%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 118 GGCATTGCTCCCTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 59
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116
||||||||||||||||||||||||| |||||| | ||| |||||| | || |||||
Sbjct 58 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTAC 3
>seq128944
Length=1011
Score = 114 bits (126), Expect = 3e-23
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 71
||| || ||| |||||||| ||| || ||| |||||||| ||||| |||||| |||||
Sbjct 595 ATCGGGCTTTTGCCCATTGTCCAAGATTCCCTGCTGCTGCCCCCCGTGGGAGTCCGGGCC 536
Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131
|||||||||||| | |||||| | ||| || || || |||| ||| | |||||||
Sbjct 535 GTGTCTCAGTCCTAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGG 476
Query 132 TGGGCTATTATCTCACCAACTACCTAAT 159
| || ||| || ||||||||||||||
Sbjct 475 TCAGCCTTTACCTGACCAACTACCTAAT 448
>seq142307
Length=895
Score = 107 bits (118), Expect = 4e-21
Identities = 115/151 (76%), Gaps = 1/151 (1%)
Strand=Plus/Plus
Query 9 TGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG 68
|| ||| || |||| |||||||| ||| || ||||||||||||| ||| | ||| || |
Sbjct 191 TGGATCGGGCTTTCGCCCATTGTACAAGATTCCCCACTGCTGCCCCCCATGGGA-TCCGA 249
Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCT 128
||||||||| ||||||| |||||| | ||| | || || |||| ||| | ||||
Sbjct 250 GCCGTGTCTTAGTCCCAGTGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCATTGGCT 309
Query 129 TGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||| || ||| || ||||||||||||||
Sbjct 310 TGGTCAGCCTTTACCTGACCAACTACCTAAT 340
>seq323673
Length=254
Score = 104 bits (114), Expect = 5e-20
Identities = 80/95 (84%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 146 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 205
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101
||||||||||||||||||| ||| || | ||| ||
Sbjct 206 GGGCCGTGTCTCAGTCCCAGTGTAGCTGATCATCC 240
>seq163296
Length=707
Score = 100 bits (110), Expect = 6e-19
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 71
||| || |||| | |||||| ||| || ||||||||||||| ||||| |||||| |||||
Sbjct 363 ATCGGGCTTTCGCTCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCC 422
Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACC 101
|||||||||||||| |||||| | ||| ||
Sbjct 423 GTGTCTCAGTCCCAGTGTGGCTGATCATCC 452
>seq869198
Length=227
Score = 98.7 bits (108), Expect = 2e-18
Identities = 78/94 (83%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67
||| ||| || |||| |||||||| ||| || |||||||||| || || || |||||| |
Sbjct 109 CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTACCCCCTGTGGGAGTCCG 168
Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101
|||||||||||||||||| |||||| | ||| ||
Sbjct 169 GGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 202
>seq757116
Length=2596
Score = 80.6 bits (88), Expect = 5e-13
Identities = 73/92 (79%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| ||| ||||||| | || || ||||||||||||||| ||||
Sbjct 1897 GGCATTGCTCCGTCAGGTTTTATCCCATTGCGGAAAATTCCCCACTGCTGCCTCATGTAG 1838
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92
|||||| | | |||||||||| || ||||||
Sbjct 1837 GAGTCTCGATCATGTCTCAGTCTCAGTGTGGC 1806
>seq3719
Length=11191
Score = 78.8 bits (86), Expect = 2e-12
Identities = 66/81 (81%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 23 CCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTC 82
|||||||||| || || ||||||| |||||||||||||||||| || ||||||||||||
Sbjct 7153 CCCCATTGTGAAAAATTCCCCACTATTGCCTCCCGTAGGAGTCTTGGTCGTGTCTCAGTC 7212
Query 83 CCAATGTGGCCGTTCAACCTC 103
| ||| | | ||| ||||
Sbjct 7213 TGAGTGTAGTTGATCATCCTC 7233
>seq1743223
Length=247
Score = 77.0 bits (84), Expect = 6e-12
Identities = 68/85 (80%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 222 TTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCAC 281
|||| ||| |||||| |||||| ||||||||| ||| | ||| ||||| | |||
Sbjct 1 TTATCCGGCATTAGCCCCGGTTTCCCGGAGTTATTCCAGTCTTATAGGTAGGTTACCCAC 60
Query 282 GTGTTACTCACCCGTCCGCCACTAA 306
|||||||||||||||||||| ||||
Sbjct 61 GTGTTACTCACCCGTCCGCCGCTAA 85
>seq793278
Length=2762
Score = 77.0 bits (84), Expect = 6e-12
Identities = 54/62 (87%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||| | |||| ||||||| | || || ||||||||||||||||||||||||||||||| |
Sbjct 2642 TCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCTG 2583
Query 73 TG 74
||
Sbjct 2582 TG 2581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980244894720
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