Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1769377 183 6e-44 seq1497236 172 1e-40 seq748334 172 1e-40 seq1022886 170 4e-40 seq656910 161 2e-37 seq614993 161 2e-37 seq1484266 159 7e-37 seq854589 136 8e-30 seq771549 132 9e-29 seq748961 132 9e-29 seq128944 114 3e-23 seq142307 107 4e-21 seq323673 104 5e-20 seq163296 100 6e-19 seq869198 98.7 2e-18 seq757116 80.6 5e-13 seq3719 78.8 2e-12 seq1743223 77.0 6e-12 seq793278 77.0 6e-12 >seq1769377 Length=530 Score = 183 bits (202), Expect = 6e-44 Identities = 228/305 (75%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGT-GCAATATCCCCCACTGCTGCCTCCCGTA 59 ||| | ||| | ||||| |||| |||||||| |||| || |||||||||||||||||||| Sbjct 47 GGCATTGCTCCGTCAGGCTTTCGCCCATTGTAGCAA-ATTCCCCACTGCTGCCTCCCGTA 105 Query 60 GGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGA 119 |||||||||||||||||||||||||| ||||| | ||| |||||| | | ||||| || Sbjct 106 GGAGTCTGGGCCGTGTCTCAGTCCCATTGTGGTTGATCATCCTCTCGGACTAGCTACTGA 165 Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTC 179 || || |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 166 TCATCTCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTG 225 Query 180 AGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 ||| ||| || | ||| ||||| || || | ||||||||| Sbjct 226 GGCG----GGCTT--CTC-----CTTTTGC--TCCTC--ACCCTACGGGGTATTAGCAAC 270 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 | |||||| ||| ||| ||| || |||||||| | || ||||||||||||| || Sbjct 271 CATTTCCAGTTGTTGTTCACCTCCCAAGGGCAGGTT-TTTACTCGTTACTCACCCGTTCG 329 Query 300 CCACT 304 ||||| Sbjct 330 CCACT 334 >seq1497236 Length=308 Score = 172 bits (190), Expect = 1e-40 Identities = 134/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||||||||||| || | |||||||||||| || ||||||||||||||||||||| Sbjct 102 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAAAATTCCCCACTGCTGCCTCCCGTAG 161 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | ||| |||||||| || |||| ||| Sbjct 162 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCAGCCTCTCAGACCAGCTAGGGAT 221 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||||| || |||| || ||| | |||| |||| |||||| Sbjct 222 CGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATC 261 >seq748334 Length=307 Score = 172 bits (190), Expect = 1e-40 Identities = 122/140 (87%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||||||||||| || | |||||||||||| || ||||||||||||||||||||| Sbjct 168 GGCGTTGCTGCATCAGGCTTCCGCCCATTGTGCAAAATTCCCCACTGCTGCCTCCCGTAG 227 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 228 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 287 Query 121 CGTCGGCTTGGTGGGCTATT 140 | ||| |||||| |||||| Sbjct 288 CATCGCCTTGGTAAGCTATT 307 >seq1022886 Length=529 Score = 170 bits (188), Expect = 4e-40 Identities = 144/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 2 GCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGG 61 |||| ||| | ||||| |||| ||||| | || || |||||| ||||||||||||||| Sbjct 319 GCGTTGCTCCGTCAGGCTTTCGATCATTGCGGAAAATTCCCCACAGCTGCCTCCCGTAGG 378 Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 |||||||||||||||||||||| | |||| | | ||| ||||||| || ||||| |||| Sbjct 379 AGTCTGGGCCGTGTCTCAGTCCAAGTGTGTCTGATCATCCTCTCAAACCAGCTACTGATC 438 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 439 ATCGCCTTGGTAAGCTATTCCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTT 495 >seq656910 Length=211 Score = 161 bits (178), Expect = 2e-37 Identities = 121/142 (85%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 37 ATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTT 96 || |||||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 3 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 62 Query 97 CAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156 || |||||| | || ||||| |||| ||| |||||| ||||| ||||||||||| || Sbjct 63 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATCGCCTCACCAACTAGCT 122 Query 157 AATCGGCCGCGAGCCCATCTTT 178 |||| | ||||||||| || || Sbjct 123 AATCAGACGCGAGCCCCTCCTT 144 >seq614993 Length=211 Score = 161 bits (178), Expect = 2e-37 Identities = 127/152 (84%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || |||||| |||||||||||||| Sbjct 60 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCGCTGCCTCCCGTAG 119 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 120 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 179 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 | ||| |||||| |||||| |||||||||| Sbjct 180 CATCGCCTTGGTAAGCTATTGCCTCACCAACT 211 >seq1484266 Length=243 Score = 159 bits (176), Expect = 7e-37 Identities = 123/146 (84%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||| | || || |||||| ||||||||||||||||||| Sbjct 98 GCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCACTGCCTCCCGTAGGAGTCT 157 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| Sbjct 158 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGC 217 Query 127 CTTGGTGGGCTATTATCTCACCAACT 152 |||||| |||||| |||||||||| Sbjct 218 CTTGGTAAGCTATTGCCTCACCAACT 243 >seq854589 Length=2248 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 1848 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 1907 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 1908 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 1967 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 1968 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 2000 >seq771549 Length=6473 Score = 132 bits (146), Expect = 9e-29 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| |||| | || || |||||||||||||||| ||||||||| Sbjct 3156 GCTCCGTCAGGCTTTCGCCCANNNCGGAAAATTCCCCACTGCTGCCTCCTTTAGGAGTCT 3215 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||| | ||||| ||||| | | ||| | ||| |||||||| || |||| |||| ||| Sbjct 3216 GGGTCATGTCTTAGTCCTAGTATGGTTGATCATCCTCTCAGACCATCTACTGATCATCGC 3275 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 |||| | |||||| |||||||| || |||||||| || |||||| || || Sbjct 3276 CTTGCTAAGCTATTGCCTCACCAAGTAGCTAATCGGACGGGAGCCCCTCCTT 3327 >seq748961 Length=209 Score = 132 bits (146), Expect = 9e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 118 GGCATTGCTCCCTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 59 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| Sbjct 58 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTAC 3 >seq128944 Length=1011 Score = 114 bits (126), Expect = 3e-23 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 71 ||| || ||| |||||||| ||| || ||| |||||||| ||||| |||||| ||||| Sbjct 595 ATCGGGCTTTTGCCCATTGTCCAAGATTCCCTGCTGCTGCCCCCCGTGGGAGTCCGGGCC 536 Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGG 131 |||||||||||| | |||||| | ||| || || || |||| ||| | ||||||| Sbjct 535 GTGTCTCAGTCCTAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGG 476 Query 132 TGGGCTATTATCTCACCAACTACCTAAT 159 | || ||| || |||||||||||||| Sbjct 475 TCAGCCTTTACCTGACCAACTACCTAAT 448 >seq142307 Length=895 Score = 107 bits (118), Expect = 4e-21 Identities = 115/151 (76%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 9 TGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGG 68 || ||| || |||| |||||||| ||| || ||||||||||||| ||| | ||| || | Sbjct 191 TGGATCGGGCTTTCGCCCATTGTACAAGATTCCCCACTGCTGCCCCCCATGGGA-TCCGA 249 Query 69 GCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCT 128 ||||||||| ||||||| |||||| | ||| | || || |||| ||| | |||| Sbjct 250 GCCGTGTCTTAGTCCCAGTGTGGCTGATCATCTGAAAAGACCAGCTAAGCATCATTGGCT 309 Query 129 TGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| || ||| || |||||||||||||| Sbjct 310 TGGTCAGCCTTTACCTGACCAACTACCTAAT 340 >seq323673 Length=254 Score = 104 bits (114), Expect = 5e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 146 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 205 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 ||||||||||||||||||| ||| || | ||| || Sbjct 206 GGGCCGTGTCTCAGTCCCAGTGTAGCTGATCATCC 240 >seq163296 Length=707 Score = 100 bits (110), Expect = 6e-19 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCC 71 ||| || |||| | |||||| ||| || ||||||||||||| ||||| |||||| ||||| Sbjct 363 ATCGGGCTTTCGCTCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCC 422 Query 72 GTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 |||||||||||||| |||||| | ||| || Sbjct 423 GTGTCTCAGTCCCAGTGTGGCTGATCATCC 452 >seq869198 Length=227 Score = 98.7 bits (108), Expect = 2e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67 ||| ||| || |||| |||||||| ||| || |||||||||| || || || |||||| | Sbjct 109 CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTACCCCCTGTGGGAGTCCG 168 Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 |||||||||||||||||| |||||| | ||| || Sbjct 169 GGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 202 >seq757116 Length=2596 Score = 80.6 bits (88), Expect = 5e-13 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| ||| ||||||| | || || ||||||||||||||| |||| Sbjct 1897 GGCATTGCTCCGTCAGGTTTTATCCCATTGCGGAAAATTCCCCACTGCTGCCTCATGTAG 1838 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGC 92 |||||| | | |||||||||| || |||||| Sbjct 1837 GAGTCTCGATCATGTCTCAGTCTCAGTGTGGC 1806 >seq3719 Length=11191 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 23 CCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTC 82 |||||||||| || || ||||||| |||||||||||||||||| || |||||||||||| Sbjct 7153 CCCCATTGTGAAAAATTCCCCACTATTGCCTCCCGTAGGAGTCTTGGTCGTGTCTCAGTC 7212 Query 83 CCAATGTGGCCGTTCAACCTC 103 | ||| | | ||| |||| Sbjct 7213 TGAGTGTAGTTGATCATCCTC 7233 >seq1743223 Length=247 Score = 77.0 bits (84), Expect = 6e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 222 TTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCAC 281 |||| ||| |||||| |||||| ||||||||| ||| | ||| ||||| | ||| Sbjct 1 TTATCCGGCATTAGCCCCGGTTTCCCGGAGTTATTCCAGTCTTATAGGTAGGTTACCCAC 60 Query 282 GTGTTACTCACCCGTCCGCCACTAA 306 |||||||||||||||||||| |||| Sbjct 61 GTGTTACTCACCCGTCCGCCGCTAA 85 >seq793278 Length=2762 Score = 77.0 bits (84), Expect = 6e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||| | |||| ||||||| | || || ||||||||||||||||||||||||||||||| | Sbjct 2642 TCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCTG 2583 Query 73 TG 74 || Sbjct 2582 TG 2581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980244894720