Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq34740 237 4e-60 seq12052 215 1e-53 seq203887 208 2e-51 seq857749 163 7e-38 seq346858 154 3e-35 seq344392 143 6e-32 seq59432 136 9e-30 seq776938 98.7 2e-18 seq1815009 87.8 4e-15 seq736053 87.8 4e-15 seq1007577 84.2 5e-14 seq835701 84.2 5e-14 seq89307 78.8 2e-12 >seq34740 Length=207 Score = 237 bits (262), Expect = 4e-60 Identities = 177/205 (86%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139 CTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGCTCCCCTACCCAACC-A 197 ||||||||| |||| | ||||||||| | |||||||||||||||||||| || | Sbjct 3 CTCCACCACTAGATCACTCTGCAGCTTCAACGGATACACGACGCTCCCCTACCCATCCCA 62 Query 198 CACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAAT 256 | ||| |||| | |||||||||| |||| |||||| ||||||| ||||||| ||| Sbjct 63 AAAAGGAATGCCGCGGCTTCGGCGGTGTACTTGAGCCCCACTACATTGTCGGCGCAGAAC 122 Query 257 CACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC 316 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 CACTCGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC 182 Query 317 TGGTTGTCTACGCAACTCCACATCC 341 ||||||||||||||||||||||||| Sbjct 183 TGGTTGTCTACGCAACTCCACATCC 207 >seq12052 Length=1219 Score = 215 bits (238), Expect = 1e-53 Identities = 297/408 (73%), Gaps = 13/408 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||| | | || ||| | Sbjct 1044 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGA 985 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| ||||| |||| || |||||| | || |||| ||| | Sbjct 984 CAGGAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCA 925 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | |||| || |||| | || ||| Sbjct 924 GCATTCGCACTTCTGAT-ACCTCCAGCATGCC-TCACAGCACACCTTCGCAGGCTTACAG 867 Query 178 GACGCTCCCCTACCCAACCACACAG-------GTTGCCACAGCTTCGGCGGATAACTTAA 230 ||||||||||||||||| || || | |||| ||||||||| | || ||| Sbjct 866 AACGCTCCCCTACCCAACAACGCATAAGCGTCGCTGCCGCAGCTTCGGTGCATGGTTTA- 808 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || Sbjct 807 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAA 748 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 747 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACT 688 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | || |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 687 TAACCATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 640 >seq203887 Length=1855 Score = 208 bits (230), Expect = 2e-51 Identities = 298/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 1424 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1365 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 1364 GAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 1305 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | ||| ||||| || || | | Sbjct 1304 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGGTTGCTTC-CCTCTAAGGC 1249 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 1248 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTTA-G 1193 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || |||| | || || ||||||||||||||||||||||| ||| Sbjct 1192 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 1134 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||| Sbjct 1133 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTG 1074 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1073 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1025 >seq857749 Length=858 Score = 163 bits (180), Expect = 7e-38 Identities = 152/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 427 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 371 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 370 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 311 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 310 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 251 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 250 GTTTCCCTCTCG 239 >seq346858 Length=376 Score = 154 bits (170), Expect = 3e-35 Identities = 150/192 (78%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 194 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 138 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||| || || |||||||||||||| || Sbjct 137 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCTAATCCCACCTCCTGGTTGTCATCG 78 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 77 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 18 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 17 GTTTCCCTCTCG 6 >seq344392 Length=360 Score = 143 bits (158), Expect = 6e-32 Identities = 117/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| Sbjct 20 CTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTG 79 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 |||||| ||| ||| || ||| ||||| ||| | ||||||| ||||||| | Sbjct 80 GTTGTCATCGCTTGATCACTTCGTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTAC 139 Query 379 GATCTGGGCTGTTTCCCTCTCG 400 |||||||||||||||||||||| Sbjct 140 GATCTGGGCTGTTTCCCTCTCG 161 >seq59432 Length=1711 Score = 136 bits (150), Expect = 9e-30 Identities = 146/191 (76%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCG--GAATCACTTGACCAGTG 269 ||||||| | || |||| ||||| | ||||| |||| || | | || | |||||| Sbjct 1184 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAGCAA--GGCCAGTG 1127 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||| || || |||| ||||||||||||||||||||| |||||||||||||| ||| Sbjct 1126 AGCTACTATGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGC 1067 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 ||| |||||| ||||| ||| | ||||||| | |||| | ||||||||||| Sbjct 1066 TCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACGGTAGCGTACGATCTGGGCTG 1007 Query 390 TTTCCCTCTCG 400 ||||||||||| Sbjct 1006 TTTCCCTCTCG 996 >seq776938 Length=3297 Score = 98.7 bits (108), Expect = 2e-18 Identities = 112/153 (73%), Gaps = 13/153 (8%) Strand=Plus/Plus Query 260 TTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGG 319 |||| |||| ||||||||| |||||||| |||||||| |||||| | || |||||| ||| Sbjct 2638 TTGATCAGTAAGCTATTACACACTCTTTAAAGGATGGTTGCTTCTAGGCAAACCTCATGG 2697 Query 320 TTGTCTACGCAACT-------------CCACATCCTTTCCCACTGAGTCACCACTTAGGG 366 ||| ||||| |||| |||||| ||| || || |||||| Sbjct 2698 CAGTCCTTGCAACCTCCACCCCCACCCCCACCTCCTTTATCACCGAACGGTCATTTAGGG 2757 Query 367 GCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 || ||||||| ||||||||| |||||||||||| Sbjct 2758 GCTTTAGCTGGTGATCTGGGTTGTTTCCCTCTC 2790 >seq1815009 Length=244 Score = 87.8 bits (96), Expect = 4e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| |||||||||| | || |||||||||| ||||| ||| | |||| |||||| || Sbjct 152 AAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCA 211 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 ||||| || |||||||||||||||| |||| Sbjct 212 CTGAGCGGTCATTTAGGGGCCTTAGCTGGTGAT 244 >seq736053 Length=330 Score = 87.8 bits (96), Expect = 4e-15 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 308 CCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGG 367 || |||||||||||||| ||| ||| |||||| ||||| ||| | ||||||| Sbjct 1 CCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGA 60 Query 368 CCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||| |||||||||||||||||||||||| Sbjct 61 CCTTAGCGTATGATCTGGGCTGTTTCCCTCTCG 93 >seq1007577 Length=463 Score = 84.2 bits (92), Expect = 5e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 312 CCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTT 371 |||||||| ||||| | | | |||| |||||| ||||||| || ||||||||||| Sbjct 109 CCTCCTGGCTGTCTTTGTACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTT 168 Query 372 AGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| ||||| ||| ||||||||||||| Sbjct 169 AGCTGGTGATCCGGGTTGTTTCCCTCTCG 197 >seq835701 Length=1382 Score = 84.2 bits (92), Expect = 5e-14 Identities = 103/140 (74%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| |||| | ||||| |||| || ||| || ||| ||| Sbjct 573 GCTTCGGTGAATCACTTGAGCCNTGAGACATTTTCGGTGCCATGGAG---CTAGACTAGT 629 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| || |||| ||||||||||||||| ||||| |||||||| ||| | || Sbjct 630 GAGCTATTATGCTTTCTTCAAAGGATGGCTGCTTCTAAGCCCACCTCCTGCTTGACATCG 689 Query 329 CAACTCCACATCCTTTCCCA 348 | ||| |||||| ||| Sbjct 690 CGCGATCACTTCCTTTTCCA 709 >seq89307 Length=2373 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 ||| |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||| Sbjct 1929 AGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCAC 1988 Query 350 TGAGTCACCACTTAGGGGCCTTAGCT 375 |||| || ||||||||||||||| Sbjct 1989 TGAGCGGTCATTTAGGGGCCTTAGCT 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156186286080