Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq229976 134 1e-29 seq544580 127 2e-27 seq53245 111 2e-22 seq774668 93.3 4e-17 seq748832 80.6 3e-13 >seq229976 Length=1330 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 356 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 415 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 416 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 473 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 474 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 531 >seq544580 Length=248 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 230 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 171 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||| | | ||| ||||| ||| || | ||| || ||||||| Sbjct 170 GGGATAACATCATAGTAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 113 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 112 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 53 Query 190 T 190 | Sbjct 52 T 52 >seq53245 Length=3146 Score = 111 bits (122), Expect = 2e-22 Identities = 134/181 (74%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT----TTGCTCGAATACATTA 65 |||||||||||||| ||||||||| | | |||||||| |||| |||| | Sbjct 957 ACTTTTACTTTGAACAAATTAGAGTGCTTCAAGCAGGCTGGATATTGCCTGAATGCTAGT 898 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| || ||| ||| Sbjct 897 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCAGAACCAGAGGTA 839 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| ||| || || |||||| | ||||| || | |||||||||||||||| Sbjct 838 ATGATTAATGGAGACAGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGA 779 Query 186 T 186 | Sbjct 778 T 778 >seq774668 Length=4864 Score = 93.3 bits (102), Expect = 4e-17 Identities = 132/179 (74%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | || | ||| ||| | | || | |||||||| ||||| Sbjct 1792 TTACTTTGAAGAAATTAGAGTGCTCGATGCAAGCCATCGTTCTGGATACATTAGCATGGG 1733 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | ||||| | |||| ||||| ||| | | |||| || || ||||| | Sbjct 1732 ATAAAATCGTAGGAT-TCCGGTCCTATTGTGTTGACCTTCAGGATCGAA-GTGATGATTA 1675 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCA-AAGGTGAAATTCTTGGATTTAT 190 ||| ||| |||||||| ||| |||| | |||| ||| | |||||||||||||||| Sbjct 1674 ATAGGGACAGTCGGGGCATTCA-TATTTCGTAGTCACAAGATAAAATTCTTGGATTTAT 1617 >seq748832 Length=200 Score = 80.6 bits (88), Expect = 3e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 200 ATAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502980636800