Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1741358 320 3e-85 seq229976 316 4e-84 seq53245 219 8e-55 seq536982 206 5e-51 seq501782 203 6e-50 seq579307 196 9e-48 seq134688 174 3e-41 seq647521 168 1e-39 seq595012 163 5e-38 seq121707 163 5e-38 seq501781 159 6e-37 seq1488114 156 8e-36 seq837785 140 6e-31 seq506662 100 5e-19 >seq1741358 Length=230 Score = 320 bits (354), Expect = 3e-85 Identities = 205/223 (92%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTNCTGGGCCGCACGCGCGCTAC 60 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| |||||| ||||| | |||||||||| |||||| ||||||||||| ||||| Sbjct 61 ACTGACGGAGCCAGCGAGTCTA--ACCTTGGCCGAGAGGTCTTGGTAATCTTGTGAAACT 118 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 119 CCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAG 178 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||| ||||||||||||||||||||||||||| Sbjct 179 CGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 221 >seq229976 Length=1330 Score = 316 bits (350), Expect = 4e-84 Identities = 227/259 (88%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| | | || ||| ||||||||||||||||||||||||||| Sbjct 988 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 1047 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 1048 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 1107 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 1108 GCCTTGGCCGACAGGCCCGGGTAATCTTG-GAAATTTCATCGTGATGGGGATAGATCATT 1166 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1167 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 1226 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 1227 TACGTCCCTGCCCTTTGTA 1245 >seq53245 Length=3146 Score = 219 bits (242), Expect = 8e-55 Identities = 206/258 (80%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 303 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 246 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||| ||| | || || || | Sbjct 245 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGAAGGTATCAGCGTGTCCT--- 189 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||||| |||||| | | |||| | ||||||| ||||| | | ||| Sbjct 188 CCCTGGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 129 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| || | | | |||||||||| || ||||| ||||||||| ||||||| |||||| Sbjct 128 AAATTGTTCCCCATGAACGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 69 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 68 ACGTCCCTGCCCTTTGTA 51 >seq536982 Length=202 Score = 206 bits (228), Expect = 5e-51 Identities = 166/199 (83%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || ||| ||||||||||||||||||||||||| | Sbjct 199 GCTTCTTAGAGGGACTATGGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTAT 140 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||| ||||||||||||| ||||| | |||||||| || Sbjct 139 GATGCCCTTAGATGTTCTGGGTCGCACGCGCGCTATACTGATGTATTCAACGAGTATATA 80 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 79 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 20 Query 250 GCAATTATTGCTCTTCAAC 268 |||||| ||| |||||||| Sbjct 19 GCAATTGTTGGTCTTCAAC 1 >seq501782 Length=227 Score = 203 bits (224), Expect = 6e-50 Identities = 165/199 (83%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 29 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 88 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||| |||| ||| ||||||||| | |||||||| || Sbjct 89 GATGCCCTTAGATGTTCTGGGCTGCACACGCACTACACTGATGTATTCAACGAGTATATA 148 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 149 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 208 Query 250 GCAATTATTGCTCTTCAAC 268 |||||| ||| |||||||| Sbjct 209 GCAATTGTTGGTCTTCAAC 227 >seq579307 Length=212 Score = 196 bits (216), Expect = 9e-48 Identities = 155/185 (84%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| | | || ||| ||||||||||||||||||||||||||| Sbjct 28 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 87 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||||||| || | ||||||||| | |||||||| || Sbjct 88 GATGCCCTTAGATGTTCTGGGCCGCATGCTCACTACACTGATGTATTCAACGAGTATATA 147 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 148 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 207 Query 250 GCAAT 254 ||||| Sbjct 208 GCAAT 212 >seq134688 Length=432 Score = 174 bits (192), Expect = 3e-41 Identities = 194/257 (75%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 69 CGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCT 127 || |||||||||||||| | |||| | || | | | | || |||||||||||||| Sbjct 176 CGACTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCT 235 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||||||||||||||| | |||||||||||| |||||||||| | || || | | Sbjct 236 GTGATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATA 295 Query 188 ---TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | ||| ||| |||| ||||||| | | || | | ||||| ||||||| | Sbjct 296 CTGTTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGG 355 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| ||| Sbjct 356 GCATTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCG 415 Query 305 TTGATTACGTCCCTGCC 321 ||||||||||||||||| Sbjct 416 TTGATTACGTCCCTGCC 432 >seq647521 Length=200 Score = 168 bits (186), Expect = 1e-39 Identities = 116/130 (89%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||| Sbjct 135 GCTTCTTAGAGGGACTATCGCCGTTTAGCCGATGGAACTTTGAGGCAATAACAGGTCTGT 76 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 75 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 16 Query 190 ACCTTGGCCG 199 ||||||||| Sbjct 15 GCCTTGGCCG 6 >seq595012 Length=204 Score = 163 bits (180), Expect = 5e-38 Identities = 119/138 (86%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||| Sbjct 198 CCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTG 139 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||||||||||||||||| ||||||||| | |||| | | Sbjct 138 CAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCACGTTAACT 79 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 78 ACGTCCCTGCCCTTTGTA 61 >seq121707 Length=5994 Score = 163 bits (180), Expect = 5e-38 Identities = 140/172 (81%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| | || ||| || |||||||||||||||||||||||| Sbjct 592 GCTTCTTAGAGGGACTATCGCTATTTAGGCGACGGTAGTTTGAGGCAATAACAGGTCTGT 651 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||| | |||||||||||||||||| | |||||||| || Sbjct 652 GATGCCCTTAGATGTTCTGGACTGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 711 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 ||||||| | ||| |||| |||| ||| ||| | ||||| ||||||| Sbjct 712 GCCTTGGCTGACAGGCCTGGATAATATTGGGAAATTTAATCGTGATGGGGAT 763 >seq501781 Length=224 Score = 159 bits (176), Expect = 6e-37 Identities = 118/138 (86%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||| Sbjct 218 CCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTG 159 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||||||||||||||||| ||||| ||| |||||||| | Sbjct 158 CAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATTAGCCCGCGTTGACT 99 Query 311 ACGTCCCTGCCCTTTGTA 328 || |||||||||| |||| Sbjct 98 ACATCCCTGCCCTCTGTA 81 >seq1488114 Length=331 Score = 156 bits (172), Expect = 8e-36 Identities = 117/138 (85%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||| Sbjct 1 CCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTG 60 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||| ||||||||||| ||||||| | ||||||||| |||||||| | Sbjct 61 CAATTGTTGGTCTTCAATGAGGAATGCCTTGTAAGCGTGAGTCATCAGCTCGCGTTGACT 120 Query 311 ACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||| Sbjct 121 ACGNCCCTGCCCTTTGTA 138 >seq837785 Length=672 Score = 140 bits (154), Expect = 6e-31 Identities = 103/119 (87%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 12 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 71 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||||||||| |||||||||||||||| | ||||||| |||| Sbjct 72 GATGCCCTTAGATGTTCTGGGCCATACGCGCGCTACACTGATGTATTCAACGAGATCAT 130 Score = 122 bits (134), Expect = 2e-25 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301 ||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| | Sbjct 124 AGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCTAGTCATCAGCTC 183 Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| |||||||||||||||||| Sbjct 184 GCGTTGACCACGTCCCTGCCCTTTGTA 210 >seq506662 Length=231 Score = 100 bits (110), Expect = 5e-19 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | |||||||||||||||||||||||||| Sbjct 152 GCTTCTTAGAGGGACTATGGCCATTTAGGCCACAGAAGTTTGAGGCAATAACAGGTCTGT 211 Query 130 GATGCCCTTAGATGTTCTGG 149 |||||||||||||||||||| Sbjct 212 GATGCCCTTAGATGTTCTGG 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929975925760