Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq1741358 320 3e-85
seq229976 316 4e-84
seq53245 219 8e-55
seq536982 206 5e-51
seq501782 203 6e-50
seq579307 196 9e-48
seq134688 174 3e-41
seq647521 168 1e-39
seq595012 163 5e-38
seq121707 163 5e-38
seq501781 159 6e-37
seq1488114 156 8e-36
seq837785 140 6e-31
seq506662 100 5e-19
>seq1741358
Length=230
Score = 320 bits (354), Expect = 3e-85
Identities = 205/223 (92%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTNCTGGGCCGCACGCGCGCTAC 60
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
|||||| |||||| ||||| | |||||||||| |||||| ||||||||||| |||||
Sbjct 61 ACTGACGGAGCCAGCGAGTCTA--ACCTTGGCCGAGAGGTCTTGGTAATCTTGTGAAACT 118
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 119 CCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTTCAACGAGGAATTCCTAGTAAG 178
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| ||||||||| |||||||||||||||||||||||||||
Sbjct 179 CGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 221
>seq229976
Length=1330
Score = 316 bits (350), Expect = 4e-84
Identities = 227/259 (88%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||||| | | || ||| |||||||||||||||||||||||||||
Sbjct 988 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 1047
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1048 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 1107
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 1108 GCCTTGGCCGACAGGCCCGGGTAATCTTG-GAAATTTCATCGTGATGGGGATAGATCATT 1166
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1167 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 1226
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 1227 TACGTCCCTGCCCTTTGTA 1245
>seq53245
Length=3146
Score = 219 bits (242), Expect = 8e-55
Identities = 206/258 (80%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| ||||| | ||||| || | ||||| ||||||||||||||||
Sbjct 303 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 246
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||||||||||||||||||||||||| ||| | || || || |
Sbjct 245 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAATGAAGGTATCAGCGTGTCCT--- 189
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|| |||||| |||||| |||||| | | |||| | ||||||| ||||| | | |||
Sbjct 188 CCCTGGCCGAAAGGTCCGGGTAACCCGCTGAAACACCTTCGTGCTTGGGATTGGGGCTTG 129
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|||| || | | | |||||||||| || ||||| ||||||||| ||||||| ||||||
Sbjct 128 AAATTGTTCCCCATGAACGAGGAATTCCCAGTAAAGGCGTGTCATTAGCACGCCTTGATT 69
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 68 ACGTCCCTGCCCTTTGTA 51
>seq536982
Length=202
Score = 206 bits (228), Expect = 5e-51
Identities = 166/199 (83%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | | | || ||| ||||||||||||||||||||||||| |
Sbjct 199 GCTTCTTAGAGGGACTATGGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTAT 140
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||||| ||||||||||||| ||||| | |||||||| ||
Sbjct 139 GATGCCCTTAGATGTTCTGGGTCGCACGCGCGCTATACTGATGTATTCAACGAGTATATA 80
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 79 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 20
Query 250 GCAATTATTGCTCTTCAAC 268
|||||| ||| ||||||||
Sbjct 19 GCAATTGTTGGTCTTCAAC 1
>seq501782
Length=227
Score = 203 bits (224), Expect = 6e-50
Identities = 165/199 (83%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | | | || | | |||||||||||||||||||||||||||
Sbjct 29 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 88
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
|||||||||||||||||||||| |||| ||| ||||||||| | |||||||| ||
Sbjct 89 GATGCCCTTAGATGTTCTGGGCTGCACACGCACTACACTGATGTATTCAACGAGTATATA 148
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 149 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 208
Query 250 GCAATTATTGCTCTTCAAC 268
|||||| ||| ||||||||
Sbjct 209 GCAATTGTTGGTCTTCAAC 227
>seq579307
Length=212
Score = 196 bits (216), Expect = 9e-48
Identities = 155/185 (84%), Gaps = 1/185 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||||| | | || ||| |||||||||||||||||||||||||||
Sbjct 28 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 87
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
|||||||||||||||||||||||||| || | ||||||||| | |||||||| ||
Sbjct 88 GATGCCCTTAGATGTTCTGGGCCGCATGCTCACTACACTGATGTATTCAACGAGTATATA 147
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 148 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 207
Query 250 GCAAT 254
|||||
Sbjct 208 GCAAT 212
>seq134688
Length=432
Score = 174 bits (192), Expect = 3e-41
Identities = 194/257 (75%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 69 CGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCT 127
|| |||||||||||||| | |||| | || | | | | || ||||||||||||||
Sbjct 176 CGACTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCT 235
Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187
||||||||||||||||| | |||||||||||| |||||||||| | || || | |
Sbjct 236 GTGATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATA 295
Query 188 ---TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244
| ||| ||| |||| ||||||| | | || | | ||||| ||||||| |
Sbjct 296 CTGTTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGG 355
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
|||||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| |||
Sbjct 356 GCATTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCG 415
Query 305 TTGATTACGTCCCTGCC 321
|||||||||||||||||
Sbjct 416 TTGATTACGTCCCTGCC 432
>seq647521
Length=200
Score = 168 bits (186), Expect = 1e-39
Identities = 116/130 (89%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||||| | | ||||||||||| ||||||||||||||||||||||
Sbjct 135 GCTTCTTAGAGGGACTATCGCCGTTTAGCCGATGGAACTTTGAGGCAATAACAGGTCTGT 76
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 75 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 16
Query 190 ACCTTGGCCG 199
|||||||||
Sbjct 15 GCCTTGGCCG 6
>seq595012
Length=204
Score = 163 bits (180), Expect = 5e-38
Identities = 119/138 (86%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||||
Sbjct 198 CCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTG 139
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||||||||||||||||||||||||| ||||||||| | |||| | |
Sbjct 138 CAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCACGTTAACT 79
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 78 ACGTCCCTGCCCTTTGTA 61
>seq121707
Length=5994
Score = 163 bits (180), Expect = 5e-38
Identities = 140/172 (81%), Gaps = 1/172 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||||| | || ||| || ||||||||||||||||||||||||
Sbjct 592 GCTTCTTAGAGGGACTATCGCTATTTAGGCGACGGTAGTTTGAGGCAATAACAGGTCTGT 651
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
|||||||||||||||||||| | |||||||||||||||||| | |||||||| ||
Sbjct 652 GATGCCCTTAGATGTTCTGGACTGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 711
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241
||||||| | ||| |||| |||| ||| ||| | ||||| |||||||
Sbjct 712 GCCTTGGCTGACAGGCCTGGATAATATTGGGAAATTTAATCGTGATGGGGAT 763
>seq501781
Length=224
Score = 159 bits (176), Expect = 6e-37
Identities = 118/138 (86%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||||
Sbjct 218 CCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTG 159
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||||||||||||||||||||||||| ||||| ||| |||||||| |
Sbjct 158 CAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATTAGCCCGCGTTGACT 99
Query 311 ACGTCCCTGCCCTTTGTA 328
|| |||||||||| ||||
Sbjct 98 ACATCCCTGCCCTCTGTA 81
>seq1488114
Length=331
Score = 156 bits (172), Expect = 8e-36
Identities = 117/138 (85%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||||
Sbjct 1 CCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTG 60
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| ||| ||||||| ||||||||||| ||||||| | ||||||||| |||||||| |
Sbjct 61 CAATTGTTGGTCTTCAATGAGGAATGCCTTGTAAGCGTGAGTCATCAGCTCGCGTTGACT 120
Query 311 ACGTCCCTGCCCTTTGTA 328
||| ||||||||||||||
Sbjct 121 ACGNCCCTGCCCTTTGTA 138
>seq837785
Length=672
Score = 140 bits (154), Expect = 6e-31
Identities = 103/119 (87%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | | | || | | |||||||||||||||||||||||||||
Sbjct 12 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 71
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||
Sbjct 72 GATGCCCTTAGATGTTCTGGGCCATACGCGCGCTACACTGATGTATTCAACGAGATCAT 130
Score = 122 bits (134), Expect = 2e-25
Identities = 79/87 (91%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 242 AGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCAC 301
||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 124 AGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCTAGTCATCAGCTC 183
Query 302 GCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||| ||||||||||||||||||
Sbjct 184 GCGTTGACCACGTCCCTGCCCTTTGTA 210
>seq506662
Length=231
Score = 100 bits (110), Expect = 5e-19
Identities = 71/80 (89%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||| | | | || | | ||||||||||||||||||||||||||
Sbjct 152 GCTTCTTAGAGGGACTATGGCCATTTAGGCCACAGAAGTTTGAGGCAATAACAGGTCTGT 211
Query 130 GATGCCCTTAGATGTTCTGG 149
||||||||||||||||||||
Sbjct 212 GATGCCCTTAGATGTTCTGG 231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 929975925760
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