Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq12052 365 1e-98 seq203887 185 3e-44 seq59432 150 6e-34 seq736053 127 7e-27 seq857749 113 1e-22 seq1788647 93.3 1e-16 seq34740 91.5 5e-16 seq77287 89.7 2e-15 seq834628 87.8 6e-15 seq1433624 84.2 7e-14 >seq12052 Length=1219 Score = 365 bits (404), Expect = 1e-98 Identities = 375/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| ||||| | || || |||| ||||||||||||| |||||||| |||| Sbjct 302 CGAGTCTTAACTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCAT 361 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||||||||||||||| Sbjct 362 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAAT 421 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| ||||| | |||||||||||| || ||||| ||| ||||||||||||| Sbjct 422 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 481 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239 |||||| |||||||||||| ||||| | | ||| | ||||||||||| |||||| | Sbjct 482 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAATTCATCTCCGGGGGTAGAGTACTGTTTCG 541 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 || |||||||||| ||||||||||| || |||||||| ||||| | | | ||| Sbjct 542 GCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTAT 601 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | |||||| | ||| ||||||||| |||||| ||||| || || || ||| Sbjct 602 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 659 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | | | ||||| | ||||| || || || ||||| Sbjct 660 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCCCAGACA 717 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| ||| Sbjct 718 GCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTC 776 Query 478 GAG 480 ||| Sbjct 777 GAG 779 >seq203887 Length=1855 Score = 185 bits (204), Expect = 3e-44 Identities = 395/582 (68%), Gaps = 36/582 (6%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| || ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 673 CGAGTCTTAATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 732 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 733 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 792 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 793 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 852 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 853 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 907 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-------GCA 289 | | | ||| | | | ||||||| | |||||||| |||| | | Sbjct 908 -TCGGTGCGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGAC 966 Query 290 TCAGTTTTACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 || || | ||| |||||| ||||| | |||| | | | || Sbjct 967 CCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 1026 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 1027 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 1084 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||||| Sbjct 1085 GAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTTAAAGAG 1143 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 ||||||| |||||||| ||||| | ||| || || | |||| |||| || Sbjct 1144 TGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGATC 1202 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| | | ||| |||||||||||||| Sbjct 1203 TGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 1243 >seq59432 Length=1711 Score = 150 bits (166), Expect = 6e-34 Identities = 312/454 (69%), Gaps = 23/454 (5%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 685 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 744 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 745 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 804 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 805 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 862 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || ||||||| Sbjct 863 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAAC 922 Query 267 CCATTGCAAACTCCGAAT---GCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGC- 322 || | |||||| |||| | | ||| ||| | ||| || | ||||||| Sbjct 923 CCCAGGGAAACTCTGAATACAGGCCGTCATCCTTAGTAC-GGACAGACTGATTGGGTGCT 981 Query 323 -TAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 |||| ||| ||||||| || | || || | |||| | ||| || | Sbjct 982 ATAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTACCGTCCCTAAGCAATC 1041 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 1042 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 1097 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||||| || ||| |||| || || |||||||| Sbjct 1098 AGCCA-TCCTTTGAAGAAAGCATAGTAGCTCACT 1130 >seq736053 Length=330 Score = 127 bits (140), Expect = 7e-27 Identities = 207/285 (73%), Gaps = 15/285 (5%) Strand=Plus/Minus Query 98 CGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAAC 157 |||||||||| | |||||||| | |||||||||| ||||| |||||||||||||| || | Sbjct 330 CGAACCCACTTAGGTTGAAAACTGAGGGGATGAGTTGTGGATAGGGGTGAAAGGCCAATC 271 Query 158 AAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACC 216 |||| | ||||||||||||| |||||| |||||||| || | || | Sbjct 270 AAACACCGTGATAGCTGGTTCTCCCCGAAATGCATTTAGGTGCAGCGTTGCGTGGTTCTT 211 Query 217 ATCGGGGGTAGAGCACTGTTATGG-CTAGGGGGTCATTGCGACTTACC-AAACCATTGCA 274 | || |||||||||||| |||| |||||||| | | || |||||| ||| || || Sbjct 210 GTTGGAGGTAGAGCACTG-GATGGTCTAGGGGG-CTTATCGGCTTACCGAAATCA-GCCA 154 Query 275 AACTCCGAATGC--GCATCAGTTTTACCGCGGGAGTGAG--GGCATGGGTGCTAAGGTCC 330 |||||||||||| ||| || | || || || |||||| ||| ||| | |||| | | Sbjct 153 AACTCCGAATGCTGGCA--AG-TGTAGCGTGGCAGTGAGACGGC--GGGGGATAAGCTTC 99 Query 331 GTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAA 375 || ||||||| || | || || || ||||||| ||| || Sbjct 98 GTCGTCGAGAGGGAAACAGCCCAGATCATACGCTAAGGTCCCTAA 54 >seq857749 Length=858 Score = 113 bits (124), Expect = 1e-22 Identities = 261/387 (67%), Gaps = 26/387 (7%) Strand=Plus/Plus Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||| | ||||| ||||||| ||||| |||||||||||||| | ||| | ||| | Sbjct 5 ATGTGGCAAAATACGGGGATGGCTTGTGGCTAGGGGTGAAAGGCCGACCAAGATCGGATA 64 Query 169 TAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCAT---CGGGGGT 225 ||||||||| || ||||| |||||| |||| || | | || | || | | ||| Sbjct 65 TAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATGTCGATGGCCCGAGGT 122 Query 226 AGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAACCATTGCAAACTCCG 281 |||||||| |||||||| | |||| || ||||||| || | |||||||| Sbjct 123 AGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCCAGGGAAACTCCG 182 Query 282 AATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCC 335 ||| | |||| | ||| | || ||| ||||||||||| ||| Sbjct 183 AATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGTGCTAAGATCCAAAGT 238 Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | || || | ||||||| ||| || | || ||| || | Sbjct 239 CGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAA--A 296 Query 396 ACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAA 453 | |||| |||| || | |||| | |||| || |||||||||||||||| || ||| | Sbjct 297 AGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCA-TCCTTTGA 353 Query 454 AGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| |||||| |||||||| ||| || Sbjct 354 AGAAAGCGTAATAGCTCACTGGTCTAG 380 >seq1788647 Length=311 Score = 93.3 bits (102), Expect = 1e-16 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTA 81 ||| ||| | | |||||||| || |||||||| ||||| ||||||||||| | | | Sbjct 240 GTCACTGCTTATGGACCCGAATCCGGGTGATCTATCCATGACCAGGATGAAGCTTGGATG 181 Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 | || ||||||| |||| ||| | |||||| ||| | |||||| ||||| ||| Sbjct 180 AAACTAAGAAGAGGTCCAAACCGACTGACGTTGAAGAATCGGCAGATGAGTTGTGGTTAG 121 Query 142 GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 |||||| | || | | ||| | |||||||||||| |||||| Sbjct 120 GGGTGAGATGCCACTCGAACCCAAAGCTAGCTGGTTCTCCCCGAAA 75 >seq34740 Length=207 Score = 91.5 bits (100), Expect = 5e-16 Identities = 115/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 407 TTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACA 466 |||| ||||| | |||| ||||||||||||||||||| || || ||||||||||||| | Sbjct 197 TTGCGTAGACAACCAGGAGGTTGGCTTGGAAGCAGCCA-TCCTTGAAAGAGTGCGTAATA 139 Query 467 GCTCACTAGTCGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAG 525 ||||||| |||||| || ||| || ||| | ||| | |||| | |||||| Sbjct 138 GCTCACTGGTCGAGTGGTTCTGCGCCGACAATGTAGTGGGGCTCAAGTACACCGCCGAAG 79 Query 526 CAGTGGGA-TCATTTATATGATCGGTAGGGGAGC 558 | | || | || ||| | ||| ||||||||||| Sbjct 78 CCGCGGCATTCCTTTTTGGGATGGGTAGGGGAGC 45 >seq77287 Length=7591 Score = 89.7 bits (98), Expect = 2e-15 Identities = 124/170 (73%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||| ||||| | |||| ||||| |||| |||| | || ||||| ||| |||| Sbjct 256 GACCTGAAACTTATCTATCTTGCCATGAGCAGGTTGAATAGAGCTTTAACAAGCCTTGGA 197 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| ||||| ||||| | ||||| |||||||||||||| Sbjct 196 GGACCGAACCCACGTATGTGACAAAATACAGGGATAACTTGTGGTTAGGGGTGAAAGGC- 138 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || ||| | ||| ||| |||||| || |||| |||||| |||| || Sbjct 137 AACCAAGATCGGATATAACTGGTTTTC-GTGAAATCTATTTCAGTAGAGC 89 >seq834628 Length=1009 Score = 87.8 bits (96), Expect = 6e-15 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 53 CTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGT 112 ||| ||||| ||||||||||| | | | || |||||||||||| ||| |||| Sbjct 1 CTATCCATGACCAGGATGAAGCTTGAATGAAACTAAGAAGAGGTCCGAACCGACTGATGT 60 Query 113 TGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGC 172 |||| ||| || ||||||| ||||| ||||||||||| || | | ||| || ||| Sbjct 61 TGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGT 120 Query 173 TGGTTCTCTCCGA 185 |||||||| |||| Sbjct 121 TGGTTCTCCCCGA 133 >seq1433624 Length=253 Score = 84.2 bits (92), Expect = 7e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||||||||||| ||| |||||||| ||| || ||||||| ||||| ||||||||||| | Sbjct 163 GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 222 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTC 180 | | | ||| || |||||||||||| Sbjct 223 CCACTCGAACCCAGAGCTAGCTGGTTCTC 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1658875975680