Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq706818 109 1e-21 seq1292518 105 1e-20 seq351629 105 1e-20 seq748496 104 4e-20 seq749062 100 5e-19 seq733841 100 5e-19 seq512414 98.7 2e-18 seq415248 89.7 9e-16 seq673256 84.2 4e-14 seq37792 82.4 1e-13 seq950613 78.8 2e-12 seq700365 78.8 2e-12 >seq706818 Length=213 Score = 109 bits (120), Expect = 1e-21 Identities = 97/120 (81%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| |||||| Sbjct 170 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC 111 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||||| Sbjct 110 TAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 51 >seq1292518 Length=282 Score = 105 bits (116), Expect = 1e-20 Identities = 96/120 (80%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| |||||| Sbjct 8 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC 67 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||| ||| | ||||||| ||||||||||||| |||||||| ||||| Sbjct 68 CAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGTGGCGAGCAAAATGGGAGCAGCCT 127 >seq351629 Length=213 Score = 105 bits (116), Expect = 1e-20 Identities = 96/120 (80%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| |||||| Sbjct 44 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC 103 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||||| Sbjct 104 AAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 163 >seq748496 Length=211 Score = 104 bits (114), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 38 GAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAG 97 ||||| ||||| | ||| | ||| |||||||| | ||| | | | |||||| || Sbjct 1 GAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTT-GAAAATAAGCATAGATCCGGAG 59 Query 98 ATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCA 157 ||| || ||| || |||| ||| | ||| |||||||| ||| | | || Sbjct 60 ATTCCCAAATAGGTCAACCT-----TTTAA---ACTGCCTGCTGAATCCATGAGCAGGCG 111 Query 158 A-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGAT 216 | || ||| ||||||||||||||||| |||||| ||||||||||| ||| | ||| Sbjct 112 AGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGAT 171 Query 217 TCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||| ||||| |||||||||||||||| ||||| Sbjct 172 TCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 206 >seq749062 Length=209 Score = 100 bits (110), Expect = 5e-19 Identities = 95/120 (79%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| ||||||||||| ||||| |||||| Sbjct 58 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAATCATCTTAGTAGC 117 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||||| Sbjct 118 CAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 177 >seq733841 Length=218 Score = 100 bits (110), Expect = 5e-19 Identities = 95/120 (79%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| |||||| Sbjct 18 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC 77 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||| ||| | |||| || ||||| |||||||||||||||| ||||| Sbjct 78 CAGAGGAAAAGAAAGCAAAAGCGATTGCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 137 >seq512414 Length=215 Score = 98.7 bits (108), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 10/224 (4%) Strand=Plus/Minus Query 12 TGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGA 71 ||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||||| Sbjct 215 TGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGA 156 Query 72 GTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCA 131 || | ||| | | | |||||| ||||| || ||| || ||||| ||| | Sbjct 155 GTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCC-----TTTAA---A 105 Query 132 TTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAG 190 ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||||| Sbjct 104 CTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAG 45 Query 191 CTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 | ||||||||||| ||| | ||||||| ||||| |||||| Sbjct 44 CCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAG 1 >seq415248 Length=206 Score = 89.7 bits (98), Expect = 9e-16 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| |||||| ||||||||||| ||| | ||||||| ||||| Sbjct 188 GGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 129 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||| ||||||||| ||||| Sbjct 128 CGGCGAGTGAAATGGGAGCAGCCT 105 >seq673256 Length=241 Score = 84.2 bits (92), Expect = 4e-14 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| |||||| Sbjct 103 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC 44 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 ||||||||||| ||| | ||||||| ||||| |||||| Sbjct 43 CAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAG 1 >seq37792 Length=8182 Score = 82.4 bits (90), Expect = 1e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 167 CGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTA 226 |||||||||||||||||| |||||| ||||||||||| ||| | ||||| | |||| Sbjct 218 CGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCTCGTAGTA 159 Query 227 GTGGCGAGCGAAATGGGATGAGCCT 251 | | ||||| |||||||| ||||| Sbjct 158 GCGACGAGCAAAATGGGAGCAGCCT 134 >seq950613 Length=387 Score = 78.8 bits (86), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 43 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 102 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | || | | | | |||| ||||| || ||| || |||| ||| Sbjct 103 GAGTT-GAAAGTAAGCATAGTTCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 154 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | |||| | ||| ||||||| |||||||| ||| Sbjct 155 -ACTGCCTGCTGAATCCATGACCAGGCAAGATACAACCTAGCGAACTAAAACATCTTAGT 213 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| |||||||||| ||| | ||||| | ||||||||| |||||||||||| Sbjct 214 AGCCAGGGGAAAAGAAAGCAAAAGCGATTCTCGTAGTAGTGGCAAGCGAAATGGGA 269 >seq700365 Length=216 Score = 78.8 bits (86), Expect = 2e-12 Identities = 89/120 (74%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| ||||||| ||||| |||||| Sbjct 34 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACNNNNNCATCTTAGTAGC 93 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||| ||| | | |||| ||||| |||||||||||||||| ||||| Sbjct 94 CAGAGGAAAAGAAAGCAAAAGCGCTTCCTGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901699630720