Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1497236 168 1e-39 seq748961 120 6e-25 seq748334 118 2e-24 seq1484266 116 8e-24 seq854589 116 8e-24 seq614993 116 8e-24 seq1769377 114 3e-23 seq323673 91.5 3e-16 seq128944 91.5 3e-16 seq656910 87.8 4e-15 seq1022886 86.0 1e-14 seq869198 77.0 7e-12 seq163296 75.2 2e-11 seq771549 73.4 8e-11 seq757116 73.4 8e-11 >seq1497236 Length=308 Score = 168 bits (186), Expect = 1e-39 Identities = 157/198 (79%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||| | ||||||| ||| || ||||| || | ||||| | |||||| |||| || Sbjct 64 AAAGTACTTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTG 122 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 123 CGCCCATTGTGCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 182 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 |||| ||||| | | ||||||||| | ||| ||||| | ||||||| ||||||| Sbjct 183 TCCAGTGTGGCTGGTCAGCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGAGCCGTTA 242 Query 262 CCCCGCCTACTACCTAAT 279 |||| ||||||| ||||| Sbjct 243 CCCCACCTACTAGCTAAT 260 >seq748961 Length=209 Score = 120 bits (132), Expect = 6e-25 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| | | | Sbjct 170 TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGCGGCATTG 112 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || |||| || ||| |||||| || ||||| |||||||||||||||||||||| || Sbjct 111 CTCCCTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 52 Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 | |||||||||||| ||| ||||| || | ||||||| || Sbjct 51 GGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 11 >seq748334 Length=307 Score = 118 bits (130), Expect = 2e-24 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 |||| |||||||| ||| || || |||||| ||||| | | |||| |||| || Sbjct 130 AAAGCGGTTTACAACCCGAAGG-CCGTCATCCCGCACGCGGCGTTGCTGCATCAGGCTTC 188 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| ||| ||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 189 CGCCCATTGTGCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 248 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGA 228 ||| ||||| || | ||||||| || Sbjct 249 CCCAGTGTGGCTGATCATCCTCTCGGA 275 >seq1484266 Length=243 Score = 116 bits (128), Expect = 8e-24 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| || | | Sbjct 40 TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGCGACATTG 98 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || |||| || ||| |||||| || ||||| ||| ||||||||||||||||| || Sbjct 99 CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCACTGCCTCCCGTAGGAGTCTG 158 Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 | |||||||||||| ||| ||||| || | ||||||| || Sbjct 159 GGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 199 >seq854589 Length=2248 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 1826 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 1885 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 1886 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 1945 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 1946 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 2005 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 2006 GCAGGCTCATCAAACAGCG 2024 >seq614993 Length=211 Score = 116 bits (128), Expect = 8e-24 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| | | | Sbjct 8 TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGCGGCATTG 66 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || |||| || ||| |||||| || ||||| ||| |||||||||||||||||| || Sbjct 67 CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACCGCTGCCTCCCGTAGGAGTCTG 126 Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 | |||||||||||| ||| ||||| || | ||||||| || Sbjct 127 GGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 167 >seq1769377 Length=530 Score = 114 bits (126), Expect = 3e-23 Identities = 117/149 (79%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | | ||| ||||| ||||||||| | | ||| |||| || Sbjct 8 AAAAGAAGTTGACGACCTATAGG-CCTTCCACCTTCACGCGGCATTGCTCCGTCAGGCTT 66 Query 141 TCGTCCATTG-ACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 ||| |||||| | ||| ||||| |||||||||||||||||||||| ||| |||||||||| Sbjct 67 TCGCCCATTGTAGCAA-ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCA 125 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || ||| ||||| || | ||||||| || Sbjct 126 GTCCCATTGTGGTTGATCATCCTCTCGGA 154 >seq323673 Length=254 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 124 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 183 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGT 209 |||||||| ||||| ||||| || |||||||||||| ||| ||| Sbjct 184 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGT 228 >seq128944 Length=1011 Score = 91.5 bits (100), Expect = 3e-16 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | || || || | || | | |||||| |||| ||||| Sbjct 622 CCTTCTTCACTCACGCGATATTGCAGGATCGGGCTTTTGCCCATTGTCCAAGATTCCCTG 563 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| | | ||||| || | ||| Sbjct 562 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCGAA 503 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| Sbjct 502 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 448 >seq656910 Length=211 Score = 87.8 bits (96), Expect = 4e-15 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 157 ATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGAC 216 ||||| |||||||||||||||||||||| ||| |||||||||||| ||| ||||| || Sbjct 3 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 62 Query 217 CTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCT 276 | ||||||| || | ||| ||| | | || ||| || | || | || |||| || Sbjct 63 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATCGCCTCACCAACTAGCT 122 Query 277 AAT 279 ||| Sbjct 123 AAT 125 >seq1022886 Length=529 Score = 86.0 bits (94), Expect = 1e-14 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| ||||| || ||||| ||| |||||||||||||||||| ||| ||| Sbjct 330 TCAGGCTTTCGATCATTGCGGAAAATTCCCCACAGCTGCCTCCCGTAGGAGTCTGGGCCG 389 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| | | |||| || | |||||||| | | ||| ||| | | || ||| Sbjct 390 TGTCTCAGTCCAAGTGTGTCTGATCATCCTCTCAAACCAGCTACTGATCATCGCCTTGGT 449 Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279 || || || | || |||| ||||| Sbjct 450 AAGCTATTCCCTCACCAACTAGCTAAT 476 >seq869198 Length=227 Score = 77.0 bits (84), Expect = 7e-12 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || ||||| | | |||| || | || ||| |||||| |||| ||||| || Sbjct 86 CCTTCTTCACTCACGTGATATTACTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 145 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 ||||| || || || ||||| || |||||||||||| ||| ||||| Sbjct 146 CTGCTACCCCCTGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGG 192 >seq163296 Length=707 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 || ||| ||||| |||| ||||| |||||||||| ||||| ||||| || |||||||| Sbjct 369 CTTTCGCTCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCT 428 Query 198 CAGTTCCAATGTGG 211 |||| ||| ||||| Sbjct 429 CAGTCCCAGTGTGG 442 >seq771549 Length=6473 Score = 73.4 bits (80), Expect = 8e-11 Identities = 109/153 (71%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 77 TTAT-AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCA 135 |||| |||||||||| | | |||||| ||||| | || ||||| | ||| ||| Sbjct 3106 TTATCAAAAGAAGTTGATGACCCGTAGG-CCTTCCTTCTCCACGCGCAATTGCTCCGTCA 3164 Query 136 GACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGT 195 | || ||| ||| || ||||| ||||||||||||| ||||||| ||| | ||| Sbjct 3165 GGCTTTCGCCCANNNCGGAAAATTCCCCACTGCTGCCTCCTTTAGGAGTCTGGGTCATGT 3224 Query 196 CTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || ||| | | | ||| || | |||||||||| Sbjct 3225 CTTAGTCCTAGTATGGTTGATCATCCTCTCAGA 3257 >seq757116 Length=2596 Score = 73.4 bits (80), Expect = 8e-11 Identities = 111/157 (71%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| | | |||||||||| || | |||| ||||| ||| ||||| | | | Sbjct 1949 TTTCTTCTCGAAGAAAAGAAGTTGACGACATGTAGG-CCTTCCACCTCCACGCGGCATTG 1891 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || |||| | | |||||| || ||||| |||||||||||| |||||||| | Sbjct 1890 CTCCGTCAGGTTTTATCCCATTGCGGAAAATTCCCCACTGCTGCCTCATGTAGGAGTCTC 1831 Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 || | ||||||||| || ||||| ||| |||||| Sbjct 1830 GATCATGTCTCAGTCTCAGTGTGGCTCACCATCCTCT 1794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1049364727040