Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq848488 221 2e-55
seq1203990 107 3e-21
seq758071 98.7 2e-18
seq1344519 96.9 6e-18
seq768218 96.9 6e-18
seq1704461 95.1 2e-17
seq792518 93.3 7e-17
seq736425 93.3 7e-17
seq145970 93.3 7e-17
seq1336867 89.7 8e-16
seq548670 87.8 3e-15
seq1643427 86.0 1e-14
seq439210 86.0 1e-14
seq1702297 84.2 4e-14
seq1565236 82.4 1e-13
seq739630 82.4 1e-13
seq725364 82.4 1e-13
seq480115 82.4 1e-13
seq229574 82.4 1e-13
seq160137 82.4 1e-13
seq106377 82.4 1e-13
seq787643 77.0 5e-12
seq1637101 73.4 6e-11
seq57086 73.4 6e-11
>seq848488
Length=407
Score = 221 bits (244), Expect = 2e-55
Identities = 230/293 (78%), Gaps = 18/293 (6%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | | ||| || |||||||||||||||||||||||| |||||| |
Sbjct 44 GTACGAGAGGAACAGTTCA-TTCGGA-TAATTGGTTTTTGCGGCTGTCTGATCAGGCATT 101
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 102 GCCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 161
Query 121 GAACGGGGTGA-TTCTCTCCT--GCACATCGTAGTCGGATACGAAT-AGGCTT------- 169
||||| ||||| |||| | || |||| ||| |||||||||| |||| |
Sbjct 162 GAACGCGGTGATTTCTTTGCTCCACACAATATAGATGGATACGAATAAGGCGTCCTTGTG 221
Query 170 -CGGCCCCGAACCTTAGCAGGCCGGCAACGG-GCGTCCCGCGGAA--GCGCGGGGCGCTC 225
|| | | ||||| |||||||| ||||||| || |||||| || ||| |||
Sbjct 222 GCGTCGCTGAACCATAGCAGGCTAGCAACGGTGCACTTGGCGGAAAGGCCTTGGGTGCT- 280
Query 226 AGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||| |||||||| ||| |||| |||||||||| |||| | |||||
Sbjct 281 TGCTGGCGAATTGCAATGTCATTTTGCGTGGGGATAAATCATTTGTATACGAC 333
>seq1203990
Length=327
Score = 107 bits (118), Expect = 3e-21
Identities = 98/121 (81%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || | ||
Sbjct 44 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCTGT 101
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||| || |
Sbjct 102 GGCGCGAAGCTACCATGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 161
Query 121 G 121
|
Sbjct 162 G 162
>seq758071
Length=6654
Score = 98.7 bits (108), Expect = 2e-18
Identities = 96/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 6640 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 6583
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| |||||||||||| |||||||||||| || |
Sbjct 6582 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTTAGTCAGAATCCAAGCTA 6523
Query 121 G 121
|
Sbjct 6522 G 6522
>seq1344519
Length=274
Score = 96.9 bits (106), Expect = 6e-18
Identities = 90/112 (80%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 110 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 53
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
| |||||||||||| | || |||||||| ||||||||||||||||||||||
Sbjct 52 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAAT 1
>seq768218
Length=5143
Score = 96.9 bits (106), Expect = 6e-18
Identities = 92/115 (80%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 5096 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 5039
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115
| |||||| ||||| | ||| |||||||| ||||||||||||| |||||||||||
Sbjct 5038 GACGCGAAACTACCGTGTGCCGGATTATGACTGAACGCCTCTAGGTCAGAATCCA 4984
>seq1704461
Length=295
Score = 95.1 bits (104), Expect = 2e-17
Identities = 95/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 48 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 105
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| | ||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 106 GGCATGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 165
Query 121 G 121
|
Sbjct 166 G 166
>seq792518
Length=1735
Score = 93.3 bits (102), Expect = 7e-17
Identities = 93/118 (79%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| ||| |||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 1620 GTACAAGAAGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1677
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| ||
Sbjct 1678 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGC 1735
>seq736425
Length=220
Score = 93.3 bits (102), Expect = 7e-17
Identities = 88/110 (80%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62
||||||||||||| || |||| | ||||||| | ||| || ||| || |||||
Sbjct 113 ACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGG 170
Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
|||||||||||| | || |||||||| ||||||||||||||||||||||
Sbjct 171 CGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAAT 220
>seq145970
Length=2296
Score = 93.3 bits (102), Expect = 7e-17
Identities = 95/120 (79%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62
||||||||||||| || |||| | ||||||| | ||| || ||| || |||||
Sbjct 1 ACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGG 58
Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC-TAAGTCAGAATCCATGCCAG 121
|||||||||||| | ||| |||||||| ||||||| ||| |||||||||||||| || ||
Sbjct 59 CGCGAAGCTACCGTGTGCCGGATTATGACTGAACGGCTCTTAAGTCAGAATCCAAGCTAG 118
>seq1336867
Length=272
Score = 89.7 bits (98), Expect = 8e-16
Identities = 94/121 (78%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 25 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 82
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||| |||| | ||| |||| || ||||||||||||||||||||||| | || |
Sbjct 83 GGCGCGAAGGTACCGTGTGCCAGATTTTGACTGAACGCCTCTAAGTCAGAATCAAAGCTA 142
Query 121 G 121
|
Sbjct 143 G 143
>seq548670
Length=208
Score = 87.8 bits (96), Expect = 3e-15
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||| | ||| |||||||| |||||||||||||||||||||||
Sbjct 12 AGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATC 71
Query 114 CATGCCAG 121
|| || ||
Sbjct 72 CAAGCTAG 79
>seq1643427
Length=264
Score = 86.0 bits (94), Expect = 1e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116
||||| |||||||||||| | ||| |||||||| |||||||||||||||||||||||||
Sbjct 3 CAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAA 62
Query 117 GCCAG 121
|| ||
Sbjct 63 GCTAG 67
>seq439210
Length=232
Score = 86.0 bits (94), Expect = 1e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116
||||| |||||||||||| | ||| |||||||| |||||||||||||||||||||||||
Sbjct 3 CAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAA 62
Query 117 GCCAG 121
|| ||
Sbjct 63 GCTAG 67
>seq1702297
Length=267
Score = 84.2 bits (92), Expect = 4e-14
Identities = 83/105 (79%), Gaps = 2/105 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 103 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 46
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105
| |||||||||||| | || |||||||| |||||||||||||||
Sbjct 45 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAG 1
>seq1565236
Length=292
Score = 82.4 bits (90), Expect = 1e-13
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116
||||| |||||||||||| | || |||||||| |||||||||||||||||||||||||
Sbjct 3 CAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAA 62
Query 117 GCCAG 121
|| ||
Sbjct 63 GCTAG 67
>seq739630
Length=244
Score = 82.4 bits (90), Expect = 1e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||| | || |||||||| |||||||||||||||||||||||
Sbjct 16 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 75
Query 114 CATGCCAG 121
|| || ||
Sbjct 76 CAAGCTAG 83
>seq725364
Length=220
Score = 82.4 bits (90), Expect = 1e-13
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | ||| || ||| || ||||| |||||||||||| | || ||||||||
Sbjct 1 TTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGA 60
Query 91 CTGAACGCCTCTAAGTCAGAATCCATGC 118
||||||||||||||||||||||||| ||
Sbjct 61 CTGAACGCCTCTAAGTCAGAATCCAAGC 88
>seq480115
Length=208
Score = 82.4 bits (90), Expect = 1e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||| | || |||||||| |||||||||||||||||||||||
Sbjct 12 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 71
Query 114 CATGCCAG 121
|| || ||
Sbjct 72 CAAGCTAG 79
>seq229574
Length=330
Score = 82.4 bits (90), Expect = 1e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||| | || |||||||| |||||||||||||||||||||||
Sbjct 12 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 71
Query 114 CATGCCAG 121
|| || ||
Sbjct 72 CAAGCTAG 79
>seq160137
Length=1209
Score = 82.4 bits (90), Expect = 1e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||| | || |||||||| |||||||||||||||||||||||
Sbjct 1198 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 1139
Query 114 CATGCCAG 121
|| || ||
Sbjct 1138 CAAGCTAG 1131
>seq106377
Length=1064
Score = 82.4 bits (90), Expect = 1e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||| | || |||||||| |||||||||||||||||||||||
Sbjct 1049 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 990
Query 114 CATGCCAG 121
|| || ||
Sbjct 989 CAAGCTAG 982
>seq787643
Length=827
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| |
Sbjct 739 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 682
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| | ||| |||| | || | |||||||| ||||||||||||||||||||||||
Sbjct 681 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 628
>seq1637101
Length=225
Score = 73.4 bits (80), Expect = 6e-11
Identities = 76/97 (78%), Gaps = 2/97 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 95 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 38
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACG 97
| |||||||||||||||| |||||||| |||||||
Sbjct 37 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACG 1
>seq57086
Length=3907
Score = 73.4 bits (80), Expect = 6e-11
Identities = 94/124 (76%), Gaps = 8/124 (6%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 585 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 528
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTG-AACG--CCTCTAAGTCAGAATCCATG 117
| |||||||||||| | ||| |||||||| ||| |||| | |||| ||||||||| |
Sbjct 527 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAAACGGCCTTCTA---CAGAATCCAAG 471
Query 118 CCAG 121
| ||
Sbjct 470 CTAG 467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 804769018880
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