Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq848488 221 2e-55 seq1203990 107 3e-21 seq758071 98.7 2e-18 seq1344519 96.9 6e-18 seq768218 96.9 6e-18 seq1704461 95.1 2e-17 seq792518 93.3 7e-17 seq736425 93.3 7e-17 seq145970 93.3 7e-17 seq1336867 89.7 8e-16 seq548670 87.8 3e-15 seq1643427 86.0 1e-14 seq439210 86.0 1e-14 seq1702297 84.2 4e-14 seq1565236 82.4 1e-13 seq739630 82.4 1e-13 seq725364 82.4 1e-13 seq480115 82.4 1e-13 seq229574 82.4 1e-13 seq160137 82.4 1e-13 seq106377 82.4 1e-13 seq787643 77.0 5e-12 seq1637101 73.4 6e-11 seq57086 73.4 6e-11 >seq848488 Length=407 Score = 221 bits (244), Expect = 2e-55 Identities = 230/293 (78%), Gaps = 18/293 (6%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | ||| || |||||||||||||||||||||||| |||||| | Sbjct 44 GTACGAGAGGAACAGTTCA-TTCGGA-TAATTGGTTTTTGCGGCTGTCTGATCAGGCATT 101 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 102 GCCGCGAAGCTACCATCCGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCTA 161 Query 121 GAACGGGGTGA-TTCTCTCCT--GCACATCGTAGTCGGATACGAAT-AGGCTT------- 169 ||||| ||||| |||| | || |||| ||| |||||||||| |||| | Sbjct 162 GAACGCGGTGATTTCTTTGCTCCACACAATATAGATGGATACGAATAAGGCGTCCTTGTG 221 Query 170 -CGGCCCCGAACCTTAGCAGGCCGGCAACGG-GCGTCCCGCGGAA--GCGCGGGGCGCTC 225 || | | ||||| |||||||| ||||||| || |||||| || ||| ||| Sbjct 222 GCGTCGCTGAACCATAGCAGGCTAGCAACGGTGCACTTGGCGGAAAGGCCTTGGGTGCT- 280 Query 226 AGCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| |||||||| ||| |||| |||||||||| |||| | ||||| Sbjct 281 TGCTGGCGAATTGCAATGTCATTTTGCGTGGGGATAAATCATTTGTATACGAC 333 >seq1203990 Length=327 Score = 107 bits (118), Expect = 3e-21 Identities = 98/121 (81%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || | || Sbjct 44 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCTGT 101 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| ||| |||||||| ||||||||||||||||||||||||| || | Sbjct 102 GGCGCGAAGCTACCATGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 161 Query 121 G 121 | Sbjct 162 G 162 >seq758071 Length=6654 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 6640 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 6583 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| |||||||||||| |||||||||||| || | Sbjct 6582 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTTAGTCAGAATCCAAGCTA 6523 Query 121 G 121 | Sbjct 6522 G 6522 >seq1344519 Length=274 Score = 96.9 bits (106), Expect = 6e-18 Identities = 90/112 (80%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 110 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 53 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||| | || |||||||| |||||||||||||||||||||| Sbjct 52 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAAT 1 >seq768218 Length=5143 Score = 96.9 bits (106), Expect = 6e-18 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 5096 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 5039 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||| ||||| | ||| |||||||| ||||||||||||| ||||||||||| Sbjct 5038 GACGCGAAACTACCGTGTGCCGGATTATGACTGAACGCCTCTAGGTCAGAATCCA 4984 >seq1704461 Length=295 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 48 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 105 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | ||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 106 GGCATGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 165 Query 121 G 121 | Sbjct 166 G 166 >seq792518 Length=1735 Score = 93.3 bits (102), Expect = 7e-17 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||| |||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1620 GTACAAGAAGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1677 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || Sbjct 1678 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGC 1735 >seq736425 Length=220 Score = 93.3 bits (102), Expect = 7e-17 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 ||||||||||||| || |||| | ||||||| | ||| || ||| || ||||| Sbjct 113 ACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGG 170 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 |||||||||||| | || |||||||| |||||||||||||||||||||| Sbjct 171 CGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAAT 220 >seq145970 Length=2296 Score = 93.3 bits (102), Expect = 7e-17 Identities = 95/120 (79%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 3 ACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGC 62 ||||||||||||| || |||| | ||||||| | ||| || ||| || ||||| Sbjct 1 ACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGG 58 Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC-TAAGTCAGAATCCATGCCAG 121 |||||||||||| | ||| |||||||| ||||||| ||| |||||||||||||| || || Sbjct 59 CGCGAAGCTACCGTGTGCCGGATTATGACTGAACGGCTCTTAAGTCAGAATCCAAGCTAG 118 >seq1336867 Length=272 Score = 89.7 bits (98), Expect = 8e-16 Identities = 94/121 (78%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 25 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 82 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||| |||| | ||| |||| || ||||||||||||||||||||||| | || | Sbjct 83 GGCGCGAAGGTACCGTGTGCCAGATTTTGACTGAACGCCTCTAAGTCAGAATCAAAGCTA 142 Query 121 G 121 | Sbjct 143 G 143 >seq548670 Length=208 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | ||| |||||||| ||||||||||||||||||||||| Sbjct 12 AGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATC 71 Query 114 CATGCCAG 121 || || || Sbjct 72 CAAGCTAG 79 >seq1643427 Length=264 Score = 86.0 bits (94), Expect = 1e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| Sbjct 3 CAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAA 62 Query 117 GCCAG 121 || || Sbjct 63 GCTAG 67 >seq439210 Length=232 Score = 86.0 bits (94), Expect = 1e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| |||||||||||| | ||| |||||||| ||||||||||||||||||||||||| Sbjct 3 CAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAA 62 Query 117 GCCAG 121 || || Sbjct 63 GCTAG 67 >seq1702297 Length=267 Score = 84.2 bits (92), Expect = 4e-14 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 103 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 46 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105 | |||||||||||| | || |||||||| ||||||||||||||| Sbjct 45 GGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAG 1 >seq1565236 Length=292 Score = 82.4 bits (90), Expect = 1e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 ||||| |||||||||||| | || |||||||| ||||||||||||||||||||||||| Sbjct 3 CAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAA 62 Query 117 GCCAG 121 || || Sbjct 63 GCTAG 67 >seq739630 Length=244 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 16 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 75 Query 114 CATGCCAG 121 || || || Sbjct 76 CAAGCTAG 83 >seq725364 Length=220 Score = 82.4 bits (90), Expect = 1e-13 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | ||| || ||| || ||||| |||||||||||| | || |||||||| Sbjct 1 TTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGA 60 Query 91 CTGAACGCCTCTAAGTCAGAATCCATGC 118 ||||||||||||||||||||||||| || Sbjct 61 CTGAACGCCTCTAAGTCAGAATCCAAGC 88 >seq480115 Length=208 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 12 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 71 Query 114 CATGCCAG 121 || || || Sbjct 72 CAAGCTAG 79 >seq229574 Length=330 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 12 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 71 Query 114 CATGCCAG 121 || || || Sbjct 72 CAAGCTAG 79 >seq160137 Length=1209 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 1198 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 1139 Query 114 CATGCCAG 121 || || || Sbjct 1138 CAAGCTAG 1131 >seq106377 Length=1064 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | || |||||||| ||||||||||||||||||||||| Sbjct 1049 AGCCAGTGGCGCGAAGCTACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATC 990 Query 114 CATGCCAG 121 || || || Sbjct 989 CAAGCTAG 982 >seq787643 Length=827 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| | Sbjct 739 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 682 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||| |||| | || | |||||||| |||||||||||||||||||||||| Sbjct 681 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 628 >seq1637101 Length=225 Score = 73.4 bits (80), Expect = 6e-11 Identities = 76/97 (78%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 95 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 38 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACG 97 | |||||||||||||||| |||||||| ||||||| Sbjct 37 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACG 1 >seq57086 Length=3907 Score = 73.4 bits (80), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 8/124 (6%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 585 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 528 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTG-AACG--CCTCTAAGTCAGAATCCATG 117 | |||||||||||| | ||| |||||||| ||| |||| | |||| ||||||||| | Sbjct 527 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAAACGGCCTTCTA---CAGAATCCAAG 471 Query 118 CCAG 121 | || Sbjct 470 CTAG 467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804769018880