Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq45179 459 3e-124 seq57095 260 2e-64 seq155648 159 4e-34 seq213450 147 3e-30 seq352821 136 5e-27 seq856698 129 7e-25 seq79754 109 7e-19 seq788035 105 8e-18 seq36335 91.5 2e-13 seq761979 89.7 6e-13 >seq45179 Length=9647 Score = 459 bits (508), Expect = 3e-124 Identities = 548/741 (74%), Gaps = 2/741 (0%) Strand=Plus/Minus Query 190260 CAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTC 190319 ||| | || || || ||| ||||||| || |||||||||||||| || ||||| || ||| Sbjct 9628 CAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTC 9569 Query 190320 ATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGC 190378 ||| | || || |||||||| || || ||| || | | || ||||| ||||| || | Sbjct 9568 ATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTC 9510 Query 190379 GTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATC 190438 ||||||||||| || |||||||||||| || || || || || || ||||| ||||| Sbjct 9509 ATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATC 9450 Query 190439 GAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTT 190498 |||||||||| ||||| || || || |||||||| || || ||| |||| ||||| Sbjct 9449 TGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTT 9390 Query 190499 GCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCT 190558 || || || ||||| |||||| ||||||| || || |||||||| ||||| || | | Sbjct 9389 CCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT 9330 Query 190559 GGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGA 190618 || | || || || | || || ||||| | || ||||| || ||| | | ||| || Sbjct 9329 AGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 9270 Query 190619 TGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTC 190678 ||||| ||||| || || || || || | || |||| ||||| || ||||| Sbjct 9269 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 9210 Query 190679 GATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAG 190738 ||||||||||| ||||| || ||||| ||||||||||||||||| || ||||| | Sbjct 9209 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 9150 Query 190739 GTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGG 190798 ||||| |||||||||||||| ||||| || || | ||| | |||| | | || || Sbjct 9149 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 9090 Query 190799 TATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGC 190858 | |||| | ||||| ||| | ||||| ||||||||||| ||||| || ||| | || Sbjct 9089 CGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGC 9030 Query 190859 AGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCT 190918 ||| |||||||| || || |||||||| ||||| |||||||| ||||| || || ||| | Sbjct 9029 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTAT 8970 Query 190919 TCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGT 190978 |||| | ||| ||||| || ||||| || ||||| ||| || |||| || || || || Sbjct 8969 TCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 8910 Query 190979 ATTGCCAAGAGGCAACGCTCT 190999 | ||| | || |||||||| Sbjct 8909 TCTACCACGTGGAAACGCTCT 8889 >seq57095 Length=8353 Score = 260 bits (288), Expect = 2e-64 Identities = 371/511 (73%), Gaps = 12/511 (2%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 |||||| | ||| | || ||| | || ||||| || |||| ||||||||||| || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCAC 188968 ||||||||||| ||| | | | ||||| |||| || || ||||||| ||||||| | Sbjct 445 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 388 Query 188969 CCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACA 189028 | || ||||| |||||||| || || || || || ||||||| | | |||||||||| Sbjct 387 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 328 Query 189029 ACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCA 189088 | || |||||||||||| || | ||| | || || || || | ||||| ||||| | Sbjct 327 ATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 268 Query 189089 TCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAG 189148 | |||||||| || || | ||||||||| | ||||| |||||||||| | || | | Sbjct 267 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 208 Query 189149 TCTTCCACTTCCTCATCGGCATCTACGC---CTACATGGGTCGTGAGTGGGAACTCTCTT 189205 | | |||||| | | || | || || || |||||||||||||||||||| || Sbjct 207 TTCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTT 151 Query 189206 ACCGTCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCA 189264 |||||| |||||||| |||||||| ||| |||| || || || ||||||||||| || Sbjct 150 TCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCT 92 Query 189265 TCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTG 189324 | || || || || | || ||| |||||||||| || ||||| | ||||| || Sbjct 91 ACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTA 32 Query 189325 GGTATCAGTGGAACCTTCAACTACATGCTTG 189355 || ||| ||| || ||||||| ||| ||| Sbjct 31 GGAATCTCTGGTACTTTCAACTTTATGATTG 1 >seq155648 Length=2022 Score = 159 bits (176), Expect = 4e-34 Identities = 225/312 (72%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 190383 TCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGT 190442 |||||||| || ||| |||||||| ||| || || || || || | ||| ||||| || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 190443 TGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAG 190502 |||||||| ||||| || || |||||| |||| || || ||| |||| ||||| || Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 190503 GGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGA 190562 || || ||||| |||||| ||||||| || || |||||||| ||||| || | | | Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT---A 1846 Query 190563 GGAGC-ACTACTGTCA---GCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGA 190618 || || ||| ||| || || || ||||| | || ||||| || ||| | | ||| || Sbjct 1845 GGCGCGACT-CTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 1787 Query 190619 TGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTC 190678 ||||| ||||| || || || || || | || |||| ||||| || ||||| Sbjct 1786 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 1727 Query 190679 GATGGTCACTGC 190690 ||||||||||| Sbjct 1726 AATGGTCACTGC 1715 >seq213450 Length=3525 Score = 147 bits (162), Expect = 3e-30 Identities = 203/283 (72%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 189290 TTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACA 189349 |||||||||| || ||||| | ||||| || || ||| ||| || ||||||| | Sbjct 3245 TTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTA 3304 Query 189350 TGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCG 189409 || |||| || || |||||||||||||| | ||||| | || |||||| | || || | Sbjct 3305 TGATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGTGTAG 3364 Query 189410 CAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCAC 189469 | ||||| |||| ||||| || ||| || ||||||||||| | | || | Sbjct 3365 CTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGGTTC-CATGGTAGTT------ 3417 Query 189470 TGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAG 189529 || | | ||||| ||||||| || ||| || | |||||||| ||||| ||||| | Sbjct 3418 TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGG 3477 Query 189530 AAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCG 189572 |||| || || || || || ||||||||||| ||||| || || Sbjct 3478 AAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCG 3520 >seq352821 Length=202 Score = 136 bits (150), Expect = 5e-27 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 190804 TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAG 190863 |||| | ||||| ||| | ||||| ||||||||||| ||||| || ||| | ||||| | Sbjct 28 TTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGG 87 Query 190864 AAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTT 190923 ||||||| || || || ||||| ||||| |||||||| ||||| || || ||| ||||| Sbjct 88 AAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTG 147 Query 190924 CATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGT 190978 | ||| ||||| || ||||| || ||||| ||| || |||| || || || || Sbjct 148 CGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 202 >seq856698 Length=257 Score = 129 bits (142), Expect = 7e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 189694 AATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGG 189753 ||||| ||||| ||||| ||||| | ||||| |||||||||| ||| | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 189754 GCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCAC 189813 || || | ||||||||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 189814 AACTTCCCTCTTGA 189827 ||||||||||| || Sbjct 123 AACTTCCCTCTAGA 136 >seq79754 Length=5746 Score = 109 bits (120), Expect = 7e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| ||||| || ||||| ||||||||||| |||||||| ||||| ||||||||| Sbjct 4820 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGTTTTTGGTCCCAAATCTTT 4879 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 | |||||| || ||||| | ||||| |||||||||||||| ||||| Sbjct 4880 GATGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGCTATTTGT 4929 >seq788035 Length=1366 Score = 105 bits (116), Expect = 8e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 189507 TGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTT 189566 ||||||||| ||||| ||||| |||||||| || ||||| || |||||| |||| ||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 189567 CGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCT 189626 || | | |||||||||||||| || |||||||| ||||| | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 189627 CGCTGC 189632 ||||| Sbjct 1077 GGCTGC 1082 >seq36335 Length=20465 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 189283 TATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTC 189342 || ||| |||||||||| || ||||| | |||| || || ||| || || ||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 189343 AACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTG 189402 |||| ||| |||| ||||| ||||||||||||||||| ||||| || ||||||||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 189403 GGAGT 189407 || || Sbjct 3401 GGTGT 3397 >seq761979 Length=10221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 188980 ATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCT 189039 ||||||| || | |||| || || |||| | | |||| |||||| || |||||| Sbjct 475 ATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCTCT 416 Query 189040 GGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCC 189099 |||||| || | ||| | || | | || | ||||| ||||| || || ||| Sbjct 415 GGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAGTT 356 Query 189100 GCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTC 189159 || || | ||||||||| | ||||| |||||||||| | || | | || |||||| Sbjct 355 GCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACTTC 296 Query 189160 CTCATCGGCATCTACGC---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGT 189216 | | || | || || || |||||| |||||| |||||| || |||||| ||| Sbjct 295 TTACTTGG--TGTA-GCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGT 239 Query 189217 ATGCGTCCTTGGAT 189230 |||| |||||| || Sbjct 238 ATGCATCCTTGAAT 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619667203080000