Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq45179 461 8e-125 seq57095 345 5e-90 seq213450 203 4e-47 seq155648 199 4e-46 seq36335 122 1e-22 seq856698 120 3e-22 seq79754 118 1e-21 seq159272 114 1e-20 seq761979 113 5e-20 seq788035 105 7e-18 seq352821 89.7 6e-13 >seq45179 Length=9647 Score = 461 bits (510), Expect = 8e-125 Identities = 552/750 (74%), Gaps = 0/750 (0%) Strand=Plus/Minus Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 ||||| ||| | || || || ||| ||||||| || ||||||| |||| || || || Sbjct 9634 TGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATA 9575 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 ||||||||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 9574 GGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCA 9515 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333 || | ||||||||||| |||||||| ||||| || |||||||| || || || ||| Sbjct 9514 ATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGG 9455 Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 |||||| ||||||||||||| || ||||| || || ||||| || ||||| || | Sbjct 9454 CAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTT 9395 Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGC 164453 ||| ||||||| || ||||| ||||| | ||||| || ||||||||||| ||||| || Sbjct 9394 TTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 9335 Query 164454 ATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTT 164513 | | || | ||||| || || ||||||||||| || |||||||| || ||| | ||| Sbjct 9334 GTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTT 9275 Query 164514 GAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACT 164573 || || ||||| ||||||| ||| || || | || ||||||| ||||| ||| Sbjct 9274 GAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACT 9215 Query 164574 TACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAAT 164633 || || ||||||||||| |||||||| ||||| || || |||||| ||||||| |||| Sbjct 9214 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAAT 9155 Query 164634 AAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCT 164693 || |||||||| || ||||||||||| ||||| || |||| || | |||| ||| || Sbjct 9154 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCT 9095 Query 164694 ATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATT 164753 ||||| | | || | || || || | ||||| ||||| ||||| || ||||| || Sbjct 9094 ATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATC 9035 Query 164754 AGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAA 164813 | ||||| || ||||||||||||||||| ||||| || || || || || | || || Sbjct 9034 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 8975 Query 164814 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAG 164873 || | ||||| |||||||| | || ||||| || ||| || |||| || ||| Sbjct 8974 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 8915 Query 164874 GAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || ||||| || | || ||||| || ||| Sbjct 8914 GAGGTTCTACCACGTGGAAACGCTCTTTAA 8885 >seq57095 Length=8353 Score = 345 bits (382), Expect = 5e-90 Identities = 384/507 (76%), Gaps = 4/507 (1%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | |||||||||||| |||| ||||||||||| || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | ||||| |||| ||||||| || ||| | ||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| ||||| || ||| ||||||| | | ||||||||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || ||||||||||| || ||||| |||| || || || | ||||| ||||| || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||||||| ||||||| ||| | ||||||||||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || | || || |||||||| |||||||||||| | ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || |||||||| ||||| ||| ||||||||||| || |||||||| ||||| | || Sbjct 146 TCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 88 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | || ||| | | || ||| | |||||||| || |||||||||||||| | || | Sbjct 87 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAA 28 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTG 161076 |||||||||| |||||||| ||| ||| Sbjct 27 TCTCTGGTACTTTCAACTTTATGATTG 1 >seq213450 Length=3525 Score = 203 bits (224), Expect = 4e-47 Identities = 214/281 (76%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 161013 GGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG 161072 |||||||| || |||||||||||||| | || ||||||||||| |||||||| ||| Sbjct 3247 GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 3306 Query 161073 CTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT 161132 |||| || ||| |||| ||||||||| | ||||| | || |||||||| ||||| ||| Sbjct 3307 ATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGTGTAGCT 3366 Query 161133 GGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTG 161192 ||||| |||| ||||| || ||| || ||||||||||| ||| || || || Sbjct 3367 GGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGGTTCCATGG-TAGTT------TG 3419 Query 161193 GTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAA 161252 | | ||||| ||||| || || ||| || | |||||||| ||||||||||| ||| Sbjct 3420 ATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGAA 3479 Query 161253 GAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCG 161293 ||||| || || || || |||||||||||||| || || || Sbjct 3480 GAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCG 3520 >seq155648 Length=2022 Score = 199 bits (220), Expect = 4e-46 Identities = 229/308 (74%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 164283 TCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGT 164342 |||||||| |||||| | ||||| ||| |||||||| || || | ||||||||| || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 164343 TGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAA 164402 ||||||||||| || ||||| || || |||| || ||||| || | ||| ||||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 164403 GGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGT 164462 || || ||||| ||||| | ||||| || ||||||||||| ||||| || | | || Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 164463 GGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGT 164522 | |||| | || ||||||||||| || |||||||| || ||| | ||||| || ||| Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 164523 GAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATG 164582 || ||||||| ||| || || | || ||||||| ||||| ||||| || ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 164583 GTCACTGC 164590 |||||||| Sbjct 1722 GTCACTGC 1715 >seq36335 Length=20465 Score = 122 bits (134), Expect = 1e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 161004 TATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTC 161063 || ||| | |||||||| || ||||||||||||| | || ||||| ||||| ||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 161064 AACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTG 161123 ||||| ||| |||| ||||||||||| ||||||||||| ||||| || ||||||||||| Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 161124 GGTGT 161128 ||||| Sbjct 3401 GGTGT 3397 >seq856698 Length=257 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 161415 AACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGG 161474 || || ||||| |||||||| || | | ||| |||| || || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 161475 GCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCAC 161534 ||||| | | || ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 161535 AACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 ||||||||||| || | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq79754 Length=5746 Score = 118 bits (130), Expect = 1e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 164530 CAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTG 164589 ||||||| ||| || || | || ||||||| ||||| ||||| || |||||||||| Sbjct 4794 CAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTG 4853 Query 164590 CCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACT 164649 | ||||| || ||||| || || |||| | ||||||| |||||| ||||||| || | Sbjct 4854 CTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACATT 4913 Query 164650 TCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTG 164697 |||||||||| ||||| | |||| || | |||| ||| |||||| Sbjct 4914 TCTTTATGCTATTTGTACTCGTCACTGGTTTATGGATGAGTGCTATTG 4961 >seq159272 Length=944 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 164281 TCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTA 164340 ||||||| || |||| | ||||| || |||||||| ||||| || ||||||||| Sbjct 305 TCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTG 246 Query 164341 GTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCC 164400 |||||||| |||| | ||||| | || ||||| || ||||| || | ||| ||| Sbjct 245 GTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCC 186 Query 164401 AAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGG 164443 |||| || ||||| |||||| | ||||| || ||||||||||| Sbjct 185 AAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGG 143 >seq761979 Length=10221 Score = 113 bits (124), Expect = 5e-20 Identities = 184/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 160701 ATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCT 160760 || || | ||| | ||||| ||| || |||| | | |||| |||||| || |||||| Sbjct 475 ATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCTCT 416 Query 160761 GGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCT 160820 ||||| || ||||| |||| | | || | ||||| ||||| ||||| ||| | Sbjct 415 GGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAGTT 356 Query 160821 GCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTC 160880 ||||| ||||||| ||| | ||||||||||||||||| | || | | || |||||| Sbjct 355 GCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACTTC 296 Query 160881 CTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATG 160940 | | || | || || |||||| | |||| ||||||| | ||| || || ||| Sbjct 295 TTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGTATG 236 Query 160941 CGCCCCTGGATCTGCGTTGCATATT 160965 | || || || |||||||||| Sbjct 235 CATCCTTGAATTGTTGTTGCATATT 211 >seq788035 Length=1366 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 161228 TGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTT 161287 ||||||||| ||||||||||| ||||| || || ||||| || |||||| ||||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 161288 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCT 161347 || | | ||||||||||| ||| || |||||||| ||||| || ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 161348 CGCAGC 161353 || || Sbjct 1077 GGCTGC 1082 >seq352821 Length=202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 164682 TGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTG 164741 |||| ||| ||||||| | | || | || || || | ||||| ||||| ||||| Sbjct 6 TGGATGAGTGCTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTT 65 Query 164742 TCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATC 164801 || ||||| || | ||||| || |||||||||||||| || ||||| || || || || Sbjct 66 TCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATT 125 Query 164802 CTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTT 164861 || | || || || | ||||| |||||||| | || ||||| || ||| || Sbjct 126 CTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTT 185 Query 164862 GTATTTCCAGAGGAAGT 164878 |||| || ||||| || Sbjct 186 ATATTCCCTGAGGAGGT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546614334728000