Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq287375 168 1e-39 seq990633 84.2 4e-14 seq990274 78.8 2e-12 >seq287375 Length=2196 Score = 168 bits (186), Expect = 1e-39 Identities = 236/326 (72%), Gaps = 9/326 (3%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| || |||||| ||| | || ||||| ||||||||| | | | Sbjct 1459 AGGGGAGTGAAACAGTACCTGAAACCGTGTGCTTACAAATAGTCGGAGCCCGTTAAAAGG 1400 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||||||||||| | ||||| || ||||||| || | ||||||||||| Sbjct 1399 GTGACGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTACG-GTAGCGTGCGAGGTTAAG- 1342 Query 131 GCTTC--AGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188 || || || ||||| || ||||||||| || || |||||| | ||| || || Sbjct 1341 ---TCGAAGAGACGG-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCG-CAAGTACGTTGC 1287 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| ||||||| ||||||||| ||| | |||| ||||| |||||| | | | Sbjct 1286 CGTAGACCCGAAACCGTGTGATCTAGCCATGTCCAGGGTGAAGGTAGGGTAACACCTACT 1227 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| ||||||| |||||||||||| |||||| | || ||| ||||||| Sbjct 1226 GGAGGCCCGAACCCACGCACGTTGAAAAGTGCGGGGATGAGGTGTGGCTAGCGGTGAAAT 1167 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 |||||| |||| ||| |||||| || Sbjct 1166 TCCAATCGAACTCGGAGATAGCTGGT 1141 >seq990633 Length=645 Score = 84.2 bits (92), Expect = 4e-14 Identities = 211/312 (68%), Gaps = 14/312 (4%) Strand=Plus/Plus Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71 |||||||||| | |||| ||| || || ||||| || |||| || ||||| | Sbjct 184 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 242 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 243 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 301 Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | | | ||||| || ||||||||| ||||| ||||||| || || Sbjct 302 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATT-GTCACTGCTT 360 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| | | | ||| | Sbjct 361 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 420 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 421 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 478 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 479 TGCCACTCGAAC 490 >seq990274 Length=1786 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 93 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 152 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 153 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 212 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 213 AACCAAGATCGGATATAGCTGGT 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 952586179072