Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq287375 168 1e-39
seq990633 84.2 4e-14
seq990274 78.8 2e-12
>seq287375
Length=2196
Score = 168 bits (186), Expect = 1e-39
Identities = 236/326 (72%), Gaps = 9/326 (3%)
Strand=Plus/Minus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||| || |||||| ||| | || ||||| ||||||||| | | |
Sbjct 1459 AGGGGAGTGAAACAGTACCTGAAACCGTGTGCTTACAAATAGTCGGAGCCCGTTAAAAGG 1400
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
|||||||||||||||||| | ||||| || ||||||| || | |||||||||||
Sbjct 1399 GTGACGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTACG-GTAGCGTGCGAGGTTAAG- 1342
Query 131 GCTTC--AGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188
|| || || ||||| || ||||||||| || || |||||| | ||| || ||
Sbjct 1341 ---TCGAAGAGACGG-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCG-CAAGTACGTTGC 1287
Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248
||||| ||||||| ||||||||| ||| | |||| ||||| |||||| | | |
Sbjct 1286 CGTAGACCCGAAACCGTGTGATCTAGCCATGTCCAGGGTGAAGGTAGGGTAACACCTACT 1227
Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308
||||| ||||||| |||||||||||| |||||| | || ||| |||||||
Sbjct 1226 GGAGGCCCGAACCCACGCACGTTGAAAAGTGCGGGGATGAGGTGTGGCTAGCGGTGAAAT 1167
Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334
|||||| |||| ||| |||||| ||
Sbjct 1166 TCCAATCGAACTCGGAGATAGCTGGT 1141
>seq990633
Length=645
Score = 84.2 bits (92), Expect = 4e-14
Identities = 211/312 (68%), Gaps = 14/312 (4%)
Strand=Plus/Plus
Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71
|||||||||| | |||| ||| || || ||||| || |||| || ||||| |
Sbjct 184 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 242
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 243 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 301
Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
| | | | ||||| || ||||||||| ||||| ||||||| || ||
Sbjct 302 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATT-GTCACTGCTT 360
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247
| ||| |||| | |||||||| ||| || |||| ||||| | | | ||| |
Sbjct 361 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 420
Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307
|||| |||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 421 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 478
Query 308 GGCCAATCAAAC 319
|||| || |||
Sbjct 479 TGCCACTCGAAC 490
>seq990274
Length=1786
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 93 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 152
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 153 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 212
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 213 AACCAAGATCGGATATAGCTGGT 235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 952586179072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |