Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq72279 381 9e-104 seq149897 214 3e-53 seq676 163 4e-38 seq2027124 150 3e-34 seq2029915 145 1e-32 seq39360 129 9e-28 seq1699134 95.1 2e-17 seq839355 75.2 2e-11 >seq72279 Length=5110 Score = 381 bits (422), Expect = 9e-104 Identities = 242/257 (94%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 1122 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 1065 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1064 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 1005 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1004 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 945 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 944 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAAC 885 Query 240 GGCCAT-CTCCCTCGAA 255 ||| || |||||| || Sbjct 884 GGCGATAGTCCCTCTAA 868 >seq149897 Length=976 Score = 214 bits (236), Expect = 3e-53 Identities = 179/224 (80%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||| ||||||||||| |||||| |||| ||||||| ||| | Sbjct 755 GTACAAAGGGCAGGGACGTAGGCAACGCGAGCTA-ATGACTTGCGCATACTAGGCATT-C 812 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||||||||| ||||||||||||| ||||||||||| | ||||| Sbjct 813 CTCGTTGAANNNNNNNNNNNNNNNNNNTCTATCCCCATCATGATGAAATTTCCATAGATT 872 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||||||| ||||| ||| |||||||||||||| ||||||||||| Sbjct 873 ACCCGGGCCTGTCGTCCAAGCCTATATACTCGTTGAATACANNNNNNNNGCGCGCGTGCG 932 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223 |||||||| |||||||||||||||| |||||||| ||||||||| Sbjct 933 GCCCAGAATATCTAAGGGCATCACACACCTGTTAATGCCTCAAA 976 >seq676 Length=222 Score = 163 bits (180), Expect = 4e-38 Identities = 170/217 (78%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||| | Sbjct 212 GTACAAAGGGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-C 155 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-G 116 |||||| | | ||| |||| ||||| | ||||||||||||| ||| ||||| | Sbjct 154 CTCGTTCATGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCG 98 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCG 173 |||||| ||| |||| ||| | || | || ||| || |||||||||| || Sbjct 97 GTTACCCACTCCTTTCGGAGCAGGAAACAGTATGCACGATGACCACTTCAGTGTAGCACG 38 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 210 |||||||||| | |||||||||||||||||||||||| Sbjct 37 CGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTG 1 >seq2027124 Length=245 Score = 150 bits (166), Expect = 3e-34 Identities = 119/141 (84%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||| |||||||||| ||| | ||| |||||||||||||||| ||| | Sbjct 102 GTACAAAGGG-AGGGATGTAGTCAACGTGAGAT-GATTACTCGCGCTTACTAGGCATT-C 158 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 |||| |||||||||||||||||||||||||||||||||||| | |||||| Sbjct 159 CTCGNNNNNNNNNNNCAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 218 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||| |||||||||||||| Sbjct 219 ACCCGGGCCTGTCGGCCAAGG 239 >seq2029915 Length=225 Score = 145 bits (160), Expect = 1e-32 Identities = 116/138 (84%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGG 134 |||||||||||||||||||||||||| |||||||||| |||||||| || ||| |||| Sbjct 225 CAATTGCAATGATCTATCCCCATCACAATGAAATTTCCCAAGATTACATGGGCCTCTCGG 166 Query 135 CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAG---AACATC 191 ||||| ||| |||||||||||| |||| ||||| | | ||| |||| || |||||| Sbjct 165 CCAAGTCTATATACTCGTTGAATAAATCAATGTAGTGTGTGTGTGGCCTAGAAAAACATC 106 Query 192 TAAGGGCATCACAGACCT 209 ||||||||||||| |||| Sbjct 105 TAAGGGCATCACACACCT 88 >seq39360 Length=237 Score = 129 bits (142), Expect = 9e-28 Identities = 80/86 (93%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212 ||||||||||||||||||| |||||| ||||||||||||||||| |||||| ||||||| Sbjct 1 TGAATACATCAGTGTAGCGTGCGTGCAACCCAGAACATCTAAGGGTATCACACACCTGTT 60 Query 213 ATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||| ||||||| Sbjct 61 ATTGCCTCAAACTTCCGTCGCCTAAA 86 >seq1699134 Length=391 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/115 (79%), Gaps = 10/115 (9%) Strand=Plus/Minus Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAA--------CAATTGCAATGATCTATCCCC 96 |||||||||| ||| |||||||||||||| | | |||||||||||||||| | Sbjct 114 GCTTACTAGGCATT-CCTCGTTGAAGACCCAGGCCGCCTCCGTTGCAATGATCTATCCAC 56 Query 97 ATCACGATGAAATT-TCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTC 150 |||| ||||||||| | |||||||||| | ||||||| |||||| ||| |||| Sbjct 55 ATCAAGATGAAATTGCCCAAGATTACCCAGGCCTGTCGACCAAGGCTATATACTC 1 >seq839355 Length=3111 Score = 75.2 bits (82), Expect = 2e-11 Identities = 79/102 (77%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 157 TACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT-- 214 |||||||| ||||| | ||||||||||||||||| ||||||||| ||| |||||| Sbjct 848 TACATCAGAGTAGCACATGTGCGGCCCAGAACATCGAAGGGCATCGTCGACTTGTTATTA 789 Query 215 TGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 | | ||||||| | | ||||||| | || ||||||| || Sbjct 788 TCACACAAACTTACATCGCCTAAATGATGATACTCCCTCTAA 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736862491215