Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq72279 381 9e-104
seq149897 214 3e-53
seq676 163 4e-38
seq2027124 150 3e-34
seq2029915 145 1e-32
seq39360 129 9e-28
seq1699134 95.1 2e-17
seq839355 75.2 2e-11
>seq72279
Length=5110
Score = 381 bits (422), Expect = 9e-104
Identities = 242/257 (94%), Gaps = 4/257 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 1122 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 1065
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1064 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 1005
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1004 ACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 945
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 944 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCGCCTAAAC 885
Query 240 GGCCAT-CTCCCTCGAA 255
||| || |||||| ||
Sbjct 884 GGCGATAGTCCCTCTAA 868
>seq149897
Length=976
Score = 214 bits (236), Expect = 3e-53
Identities = 179/224 (80%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||| ||||||||||| |||||| |||| ||||||| ||| |
Sbjct 755 GTACAAAGGGCAGGGACGTAGGCAACGCGAGCTA-ATGACTTGCGCATACTAGGCATT-C 812
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
||||||||| ||||||||||||| ||||||||||| | |||||
Sbjct 813 CTCGTTGAANNNNNNNNNNNNNNNNNNTCTATCCCCATCATGATGAAATTTCCATAGATT 872
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||||| ||||||| ||||| ||| |||||||||||||| |||||||||||
Sbjct 873 ACCCGGGCCTGTCGTCCAAGCCTATATACTCGTTGAATACANNNNNNNNGCGCGCGTGCG 932
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 223
|||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 933 GCCCAGAATATCTAAGGGCATCACACACCTGTTAATGCCTCAAA 976
>seq676
Length=222
Score = 163 bits (180), Expect = 4e-38
Identities = 170/217 (78%), Gaps = 12/217 (6%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||| |
Sbjct 212 GTACAAAGGGCAGGGACGTAATCAACGCAAGCTA-ATGACTCACGCTTACTGGGAATT-C 155
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT---TTCAAA-G 116
|||||| | | ||| |||| ||||| | ||||||||||||| ||| ||||| |
Sbjct 154 CTCGTTCATGGGCAATAATTACAATGCCCAATCCCCATCACGA---AATGGGTTCAAGCG 98
Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACT---CGTTGAATACATCAGTGTAGCGCG 173
|||||| ||| |||| ||| | || | || ||| || |||||||||| ||
Sbjct 97 GTTACCCACTCCTTTCGGAGCAGGAAACAGTATGCACGATGACCACTTCAGTGTAGCACG 38
Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 210
|||||||||| | ||||||||||||||||||||||||
Sbjct 37 CGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTG 1
>seq2027124
Length=245
Score = 150 bits (166), Expect = 3e-34
Identities = 119/141 (84%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||| ||||| |||||||||| ||| | ||| |||||||||||||||| ||| |
Sbjct 102 GTACAAAGGG-AGGGATGTAGTCAACGTGAGAT-GATTACTCGCGCTTACTAGGCATT-C 158
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119
|||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 159 CTCGNNNNNNNNNNNCAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATT 218
Query 120 ACCCGGACCTGTCGGCCAAGG 140
|||||| ||||||||||||||
Sbjct 219 ACCCGGGCCTGTCGGCCAAGG 239
>seq2029915
Length=225
Score = 145 bits (160), Expect = 1e-32
Identities = 116/138 (84%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGG 134
|||||||||||||||||||||||||| |||||||||| |||||||| || ||| ||||
Sbjct 225 CAATTGCAATGATCTATCCCCATCACAATGAAATTTCCCAAGATTACATGGGCCTCTCGG 166
Query 135 CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAG---AACATC 191
||||| ||| |||||||||||| |||| ||||| | | ||| |||| || ||||||
Sbjct 165 CCAAGTCTATATACTCGTTGAATAAATCAATGTAGTGTGTGTGTGGCCTAGAAAAACATC 106
Query 192 TAAGGGCATCACAGACCT 209
||||||||||||| ||||
Sbjct 105 TAAGGGCATCACACACCT 88
>seq39360
Length=237
Score = 129 bits (142), Expect = 9e-28
Identities = 80/86 (93%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 153 TGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 212
||||||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||
Sbjct 1 TGAATACATCAGTGTAGCGTGCGTGCAACCCAGAACATCTAAGGGTATCACACACCTGTT 60
Query 213 ATTGCCTCAAACTTCCGTGGCCTAAA 238
|||||||||||||||||| |||||||
Sbjct 61 ATTGCCTCAAACTTCCGTCGCCTAAA 86
>seq1699134
Length=391
Score = 95.1 bits (104), Expect = 2e-17
Identities = 91/115 (79%), Gaps = 10/115 (9%)
Strand=Plus/Minus
Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAA--------CAATTGCAATGATCTATCCCC 96
|||||||||| ||| |||||||||||||| | | |||||||||||||||| |
Sbjct 114 GCTTACTAGGCATT-CCTCGTTGAAGACCCAGGCCGCCTCCGTTGCAATGATCTATCCAC 56
Query 97 ATCACGATGAAATT-TCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTC 150
|||| ||||||||| | |||||||||| | ||||||| |||||| ||| ||||
Sbjct 55 ATCAAGATGAAATTGCCCAAGATTACCCAGGCCTGTCGACCAAGGCTATATACTC 1
>seq839355
Length=3111
Score = 75.2 bits (82), Expect = 2e-11
Identities = 79/102 (77%), Gaps = 3/102 (3%)
Strand=Plus/Minus
Query 157 TACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT-- 214
|||||||| ||||| | ||||||||||||||||| ||||||||| ||| ||||||
Sbjct 848 TACATCAGAGTAGCACATGTGCGGCCCAGAACATCGAAGGGCATCGTCGACTTGTTATTA 789
Query 215 TGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255
| | ||||||| | | ||||||| | || ||||||| ||
Sbjct 788 TCACACAAACTTACATCGCCTAAATGATGATACTCCCTCTAA 747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 736862491215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |