Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq37492 138 6e-31 seq72279 131 9e-29 seq500374 116 2e-24 seq2035472 98.7 5e-19 seq887397 91.5 8e-17 seq2027472 78.8 5e-13 >seq37492 Length=262 Score = 138 bits (152), Expect = 6e-31 Identities = 103/118 (87%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59 ||||||||||||||| |||| || ||||||| || |||||| ||||| |||||| | Sbjct 11 GAACCCAAAGACTTTAGTTTCCCGAAAGGTGCTGAAGGAGTCACAAATG-GAACATCCTC 69 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 70 CAATCCCTAGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 127 >seq72279 Length=5110 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 591 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 532 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 531 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 475 >seq500374 Length=265 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| | Sbjct 41 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGTC 100 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||| ||| ||||| | | |||||| |||||||||||||||||||||| Sbjct 101 GATCCCTAGTCGACATCGTTTATTGGTGAGACTAGGACGGTATCTGATCGTCTTCGA 157 >seq2035472 Length=203 Score = 98.7 bits (108), Expect = 5e-19 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGT-CAAAATGATAACATCGCC 59 ||||| ||||||||||||||||| ||| ||| || |||| | | | |||||| Sbjct 71 GAACCTAAAGACTTTGATTTCTCATAATGTGTCGGCGGAGTGCTCTAAGC-AACATCCGT 129 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||||||| |||| |||| |||||| |||||||||||||| ||||||| Sbjct 130 CGATCCCTGGTCGGCATCGTTTGTGGTTGAGACTAGGACGGTATCTGATCATCTTCGA 187 >seq887397 Length=6958 Score = 91.5 bits (100), Expect = 8e-17 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCCC 60 |||||||||||||||||||||| ||||||| |||| |||| | |||||| | Sbjct 6731 AACCCAAAGACTTTGATTTCTCAGAAGGTGCT-AGCGGAGTCCTATAAGCAACATCCGTC 6789 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||| ||| |||| | || |||||| |||||||||| ||| ||||||| Sbjct 6790 AATCCCTAGTCGACATCATTTATGATTGAGACTAGGACGGTATCTAATCATCTTCGA 6846 >seq2027472 Length=262 Score = 78.8 bits (86), Expect = 5e-13 Identities = 58/67 (87%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| |||||||||||||||||| ||||| |||| ||||| ||||| ||||| ||| Sbjct 253 AACATCCGCCGATCCCTAGTCGGCATCGTTTATGGTT--GACTAGGACGGCATCTGTTCG 196 Query 111 TCTTCGA 117 ||||||| Sbjct 195 TCTTCGA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 272976678390