Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq37492 138 6e-31
seq72279 131 9e-29
seq500374 116 2e-24
seq2035472 98.7 5e-19
seq887397 91.5 8e-17
seq2027472 78.8 5e-13
>seq37492
Length=262
Score = 138 bits (152), Expect = 6e-31
Identities = 103/118 (87%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59
||||||||||||||| |||| || ||||||| || |||||| ||||| |||||| |
Sbjct 11 GAACCCAAAGACTTTAGTTTCCCGAAAGGTGCTGAAGGAGTCACAAATG-GAACATCCTC 69
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 70 CAATCCCTAGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 127
>seq72279
Length=5110
Score = 131 bits (144), Expect = 9e-29
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| | |||||| ||
Sbjct 591 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 532
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 531 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 475
>seq500374
Length=265
Score = 116 bits (128), Expect = 2e-24
Identities = 96/117 (82%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| | |||||| |
Sbjct 41 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGTC 100
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||| ||| ||||| | | |||||| ||||||||||||||||||||||
Sbjct 101 GATCCCTAGTCGACATCGTTTATTGGTGAGACTAGGACGGTATCTGATCGTCTTCGA 157
>seq2035472
Length=203
Score = 98.7 bits (108), Expect = 5e-19
Identities = 94/118 (80%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGT-CAAAATGATAACATCGCC 59
||||| ||||||||||||||||| ||| ||| || |||| | | | ||||||
Sbjct 71 GAACCTAAAGACTTTGATTTCTCATAATGTGTCGGCGGAGTGCTCTAAGC-AACATCCGT 129
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||| |||||||| |||| |||| |||||| |||||||||||||| |||||||
Sbjct 130 CGATCCCTGGTCGGCATCGTTTGTGGTTGAGACTAGGACGGTATCTGATCATCTTCGA 187
>seq887397
Length=6958
Score = 91.5 bits (100), Expect = 8e-17
Identities = 92/117 (79%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCCC 60
|||||||||||||||||||||| ||||||| |||| |||| | |||||| |
Sbjct 6731 AACCCAAAGACTTTGATTTCTCAGAAGGTGCT-AGCGGAGTCCTATAAGCAACATCCGTC 6789
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||| ||| |||| | || |||||| |||||||||| ||| |||||||
Sbjct 6790 AATCCCTAGTCGACATCATTTATGATTGAGACTAGGACGGTATCTAATCATCTTCGA 6846
>seq2027472
Length=262
Score = 78.8 bits (86), Expect = 5e-13
Identities = 58/67 (87%), Gaps = 2/67 (3%)
Strand=Plus/Minus
Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110
|||||| |||||||||||||||||| ||||| |||| ||||| ||||| ||||| |||
Sbjct 253 AACATCCGCCGATCCCTAGTCGGCATCGTTTATGGTT--GACTAGGACGGCATCTGTTCG 196
Query 111 TCTTCGA 117
|||||||
Sbjct 195 TCTTCGA 189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 272976678390
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |