Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq72279 242 7e-62 seq37492 206 5e-51 seq585963 150 3e-34 seq2027472 120 5e-25 seq500374 116 7e-24 seq887397 113 8e-23 seq643325 107 3e-21 seq1707759 78.8 2e-12 >seq72279 Length=5110 Score = 242 bits (268), Expect = 7e-62 Identities = 203/245 (83%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 231 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 290 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 291 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 349 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 350 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 409 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 410 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 468 Query 314 AGGGG 318 |||| Sbjct 469 GGGGG 473 >seq37492 Length=262 Score = 206 bits (228), Expect = 5e-51 Identities = 126/134 (94%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 262 AATGATTAATAGGGATAGTCGGGGGCGTCAGTATTCAGCTGTCAGAGGTGAAATTCTTGG 203 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| || Sbjct 202 ATTTGCTGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAGGGA 143 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 142 ACGAAAGTTAGGGG 129 >seq585963 Length=238 Score = 150 bits (166), Expect = 3e-34 Identities = 167/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | | || Sbjct 232 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGANNNNNNNNNNNGGG 173 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| |||| |||||| || || || ||||||||||| Sbjct 172 ATAACATCATAGGAT-TCCGGTCTTATTGTGTTGGCCTCAGTGATCGGAGTAATGATTAA 114 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || ||||||||||||||||| | Sbjct 113 TAGGGACAGTCGGGGGCATTCATATTCCATAGTCAGAGGTGAAATTCTNNNNNNNNNNAA 54 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 |||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 53 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 7 >seq2027472 Length=262 Score = 120 bits (132), Expect = 5e-25 Identities = 109/136 (80%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||| | || |||| | ||||| |||||| ||||||||||||| Sbjct 53 GTAATGATTAATAGGGACAATCAGGGGAATTCGTATTTCATTGTCGAAGGTGAAATTCTT 112 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||| ||||| ||| ||| ||||||| || ||||| || ||||||||||||| Sbjct 113 AGATTTACGAAAGACGAACAACTACGAAAGCATTTGCCAAGAATTTTTTCATTAATCA-A 171 Query 303 GAACGAAAGTTAGGGG 318 ||| ||||||| |||| Sbjct 172 GAATGAAAGTTGGGGG 187 >seq500374 Length=265 Score = 116 bits (128), Expect = 7e-24 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 261 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCA 202 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||||||| ||| ||||||| |||| Sbjct 201 TTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTTGGGGG 159 >seq887397 Length=6958 Score = 113 bits (124), Expect = 8e-23 Identities = 85/99 (86%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||||||||||||||||||||||| ||||| ||| |||| ||||| Sbjct 6950 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGTAAAAGCA 6891 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || ||||||||||||||||||||||| ||| ||||||| Sbjct 6890 TTTACCAAGGATGTTTTCATTAATCA-AGAATGAAAGTT 6853 >seq643325 Length=228 Score = 107 bits (118), Expect = 3e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||| ||||||||||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 134 GTACTGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 193 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 |||||||| ||||| ||| ||||||||||| || Sbjct 194 GGATTTATGAAAGACGAACAACTGCGAAAGCATT 227 >seq1707759 Length=221 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||||||| ||||| ||| ||||||||||| || ||||||||||||||| Sbjct 221 GAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCA 162 Query 294 T 294 | Sbjct 161 T 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896183050048