Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq72279 242 7e-62
seq37492 206 5e-51
seq585963 150 3e-34
seq2027472 120 5e-25
seq500374 116 7e-24
seq887397 113 8e-23
seq643325 107 3e-21
seq1707759 78.8 2e-12
>seq72279
Length=5110
Score = 242 bits (268), Expect = 7e-62
Identities = 203/245 (83%), Gaps = 3/245 (1%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||||| ||| | |||| | ||||||||||||||
Sbjct 231 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 290
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||| | |||||| | |||| ||||| |||||| | ||| || |||||||||||
Sbjct 291 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 349
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
|||||| ||||||||| | ||||| || |||||||||||||||||||||||||| |
Sbjct 350 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 409
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||| ||| ||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 410 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 468
Query 314 AGGGG 318
||||
Sbjct 469 GGGGG 473
>seq37492
Length=262
Score = 206 bits (228), Expect = 5e-51
Identities = 126/134 (94%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 262 AATGATTAATAGGGATAGTCGGGGGCGTCAGTATTCAGCTGTCAGAGGTGAAATTCTTGG 203
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
|||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 202 ATTTGCTGAAGACTAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAGGGA 143
Query 305 ACGAAAGTTAGGGG 318
||||||||||||||
Sbjct 142 ACGAAAGTTAGGGG 129
>seq585963
Length=238
Score = 150 bits (166), Expect = 3e-34
Identities = 167/227 (74%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
|||||||||| ||||||||||| |||||||| ||| | |||| | | ||
Sbjct 232 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGANNNNNNNNNNNGGG 173
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
|||| | |||||| | |||| |||| |||||| || || || |||||||||||
Sbjct 172 ATAACATCATAGGAT-TCCGGTCTTATTGTGTTGGCCTCAGTGATCGGAGTAATGATTAA 114
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
|||||| ||||||||| | ||||| || ||||||||||||||||| |
Sbjct 113 TAGGGACAGTCGGGGGCATTCATATTCCATAGTCAGAGGTGAAATTCTNNNNNNNNNNAA 54
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
|||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 53 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 7
>seq2027472
Length=262
Score = 120 bits (132), Expect = 5e-25
Identities = 109/136 (80%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||||||||| | || |||| | ||||| |||||| |||||||||||||
Sbjct 53 GTAATGATTAATAGGGACAATCAGGGGAATTCGTATTTCATTGTCGAAGGTGAAATTCTT 112
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||| ||||| ||| ||| ||||||| || ||||| || |||||||||||||
Sbjct 113 AGATTTACGAAAGACGAACAACTACGAAAGCATTTGCCAAGAATTTTTTCATTAATCA-A 171
Query 303 GAACGAAAGTTAGGGG 318
||| ||||||| ||||
Sbjct 172 GAATGAAAGTTGGGGG 187
>seq500374
Length=265
Score = 116 bits (128), Expect = 7e-24
Identities = 89/104 (86%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| || |||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 261 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCA 202
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| ||||| |||||||||||||||| ||| ||||||| ||||
Sbjct 201 TTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAGTTGGGGG 159
>seq887397
Length=6958
Score = 113 bits (124), Expect = 8e-23
Identities = 85/99 (86%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| || |||||||||||||||||||||||||| ||||| ||| |||| |||||
Sbjct 6950 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGTAAAAGCA 6891
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|| ||||||||||||||||||||||| ||| |||||||
Sbjct 6890 TTTACCAAGGATGTTTTCATTAATCA-AGAATGAAAGTT 6853
>seq643325
Length=228
Score = 107 bits (118), Expect = 3e-21
Identities = 80/94 (85%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||| ||||||||||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 134 GTACTGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 193
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276
|||||||| ||||| ||| ||||||||||| ||
Sbjct 194 GGATTTATGAAAGACGAACAACTGCGAAAGCATT 227
>seq1707759
Length=221
Score = 78.8 bits (86), Expect = 2e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293
||||||||||||||||| ||||| ||| ||||||||||| || |||||||||||||||
Sbjct 221 GAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCA 162
Query 294 T 294
|
Sbjct 161 T 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 896183050048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |