Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq72279 201 5e-49 seq1976334 136 2e-29 seq2008938 122 4e-25 seq1629414 120 1e-24 seq43960 116 2e-23 seq37223 111 6e-22 seq58383 109 2e-21 seq26011 109 2e-21 seq1368783 91.5 6e-16 seq271959 86.0 3e-14 seq376727 78.8 4e-12 >seq72279 Length=5110 Score = 201 bits (222), Expect = 5e-49 Identities = 218/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 2528 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTTTGA 2587 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 2588 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 2644 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | | || || || |||| ||||| |||| ||||||||||||| Sbjct 2645 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 2704 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 2705 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 2764 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 2765 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2807 Score = 149 bits (164), Expect = 3e-33 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||| | | | || || || Sbjct 2149 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCCGTCCAAGGC 2208 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 2209 TAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 2268 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | |||||||| | ||||||||| Sbjct 2269 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 2313 >seq1976334 Length=6671 Score = 136 bits (150), Expect = 2e-29 Identities = 203/281 (72%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAAC 466 || |||||| ||||| ||||||||||||| |||| |||||| || || || ||| Sbjct 578 CCTGTCTTGCAACACAGACCAAGGAGTCTGACATGGGTGCGAGGTGATGAGTTTCGAAAG 637 Query 467 CCGTGC-GCGTAATGAAAGTGA-ACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGACC 523 | | ||| || ||| ||| | | ||| || ||| |||| ||||| | || Sbjct 638 GTGGGATGCGCAAGGAAGCTGACAAGCAGGAGG---CCCTCACGGGTCGCACCGCTGTCC 694 Query 524 GATCCTGATGTCTTCG-GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 | |||| | | || | || | || |||| ||||| ||||||||||| |||| ||| Sbjct 695 AACCCTGCTCTTTTGGTGAACGGTTCGAGTTGGAGCAAGCCTGTTGGGACCTGAAATATG 754 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 | |||||||| ||| ||| ||| ||| |||||||||||||||||| ||| |||| | Sbjct 755 GAGAACTATGTGTGAGCGGGGCGAAACCAAAGGAAACTCTGGTGGAGGATCGAAGCGATA 814 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||| | || || || |||||||||||||||| Sbjct 815 CTAACGTGCAAATTGTTCTTCTAACTTGGGTATAGGGGCGA 855 Score = 116 bits (128), Expect = 2e-23 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| ||| ||| |||| | ||| | || |||| ||| | ||| Sbjct 171 GAGGCGCCGTCAACGAGTCGGGTTATTTAGGAAAGTAGCCCAAATTGGGCAGTAGACTTC 230 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| || |||||||||||||| ||||||| | || ||||||||| Sbjct 231 ATCCAAGGCTAAATACAGGTGAGAGACCGATAGCGGACAAGTACTGCGAGGGAAAGATGA 290 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| |||||| ||| ||||| ||| || | ||||| Sbjct 291 AAAGGACTTTGAAAATAGAGTCAAAGAGTTCTTGAAA 327 >seq2008938 Length=1131 Score = 122 bits (134), Expect = 4e-25 Identities = 194/276 (70%), Gaps = 7/276 (3%) Strand=Plus/Plus Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTCAAACCCGT 470 ||||| |||||| || ||||||||| |||| ||||||| ||| | | ||||| | Sbjct 851 TCTTGAAACACGAACAAAGGAGTCTGACATGCGTGCGAGTCCACGGGCTTTGAAACCTGG 910 Query 471 GC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG--TGCACCATCGACCGATC 527 | || ||| ||| ||| ||| ||||| || | | || ||||| | || | | Sbjct 911 GATGCTTAAGGAAGCTGAC--GAG-TGGGAGGCCCTCACGGGCTGCACGGCTGGCCAACC 967 Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 | ||| | | || || | |||| |||| | |||| ||||||||||||||||||| Sbjct 968 CGGATCTTCTATGAAGGGCTCGAGTTGGAGCGCACCTGTCAGGACCCGAAAGATGGTGAA 1027 Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 |||||| ||| ||| ||||||| | | |||||||||||||||||| |||| Sbjct 1028 CTATGCGTGAGCGGGGCGAAGCCACACGTAACTCTGGTGGAGGCTCGAAGCGANNNNNNN 1087 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||| | |||||||||||||||| Sbjct 1088 NNNNAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1123 Score = 107 bits (118), Expect = 8e-21 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || ||||||| ||||||||| |||||||| | || ||| ||| | | Sbjct 456 GAGGCACCGTCAACGAGTCAGGTTGTTTGGCAATGCAGCCCAAATCGGGCGGTTGGCTCC 515 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||| || |||| ||||||| || ||||||||| Sbjct 516 CTCCAAGGCTAAATACAGGCGAGAGACAGACAGCGAACAAGTACCCCGAGGGAAAGATGA 575 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 || |||||| ||||||||| ||| || |||||||| | |||||||| Sbjct 576 AAGAGACTTTGAAAAGAGAGTCAAAGAGTNNNTGAAATTGCCGGGAGGGAAGC 628 >seq1629414 Length=405 Score = 120 bits (132), Expect = 1e-24 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||| ||||||||||||||||||||||||| |||| || |||||||||||||||| | Sbjct 116 CTGTAGGGACCCGAAAGATGGTGAACTATGTCTGAGCGAGGCGAAGCCAGAGGAAACTGT 175 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||||||||||| |||| | || ||||||||||| | ||| | || |||||||| || Sbjct 176 GGTGGAGGCTCAAAGCGATACTAACGTGCAAATCGTTTGTCTGACTTTGGTATAGGTGC 234 >seq43960 Length=305 Score = 116 bits (128), Expect = 2e-23 Identities = 86/99 (87%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||| | Sbjct 208 CTGTTGGGACCCGAAAGATGGTGAAC-ATGCCTGAGCGGGGCGAAGGCAGAGGAAACTGT 266 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 |||||||||||| |||| | || ||||||||||| ||| Sbjct 267 GGTGGAGGCTCGTAGCGATAGTGACGTGCAAATCGTTCG 305 >seq37223 Length=277 Score = 111 bits (122), Expect = 6e-22 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||| |||||| ||||||| ||||||||||||||| | ||| | ||||| | |||||||| Sbjct 270 CTGTCGGGACCAGAAAGATAGTGAACTATGCCTGAGTGGGGCGGAGCCAAAAGAAACTCT 211 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||| ||||| |||| | || | ||||||| ||||| | ||||| |||| |||| Sbjct 210 GGTGGATGCTCGAAGCGATAATGATGATCAAATCGTTCGTCTGACTTGGGCATAGCGGCG 151 Query 683 A 683 | Sbjct 150 A 150 >seq58383 Length=1239 Score = 109 bits (120), Expect = 2e-21 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 || || || ||| ||||||||||||||| ||| | || || |||| | | | || | Sbjct 842 CCATCAACAAGTTGAGTTGTTTGGGAATCCAGTACAAATCGGCCGGTAGACTCCATCAAT 901 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 | |||||| ||| |||||||||| | ||||||| |||| |||||||||||| | Sbjct 902 GGTTAAATACAGGCAGGAGACCGATATCAAACAAGTACCGTGAGGGAAAGATGAAAATGA 961 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||| ||||||||| ||| || | | ||||||| | ||||||||| Sbjct 962 CTTTGAAAAGAGAGTCAAAGAGTGCATAAAATTGTCGGGAGGGAAGCG 1009 >seq26011 Length=1192 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599 || || ||||| | ||||| | ||| |||| | ||||||||||||||||||| ||| Sbjct 1062 GAAGGGTTTGATTT-GAGCACACGTGTCGGGAACAGAAAGATGGTGAACTATGCATGAGC 1120 Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||||||||| ||||||||||||||||||||||| | || | || ||||||||||| | Sbjct 1121 GGGGTGAAGCGGGAGGAAACTCTGGTGGAGGCTCGAAACGATACTTACGTGCAAATCGTT 1180 Query 660 CGTCAAATTTGG 671 ||| | |||| Sbjct 1181 TGTCTGACTTGG 1192 >seq1368783 Length=201 Score = 91.5 bits (100), Expect = 6e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 || || || ||||| |||||| |||||||||| | || ||| ||| | | | || || Sbjct 119 CCGTCAACAAGTCGGCTTGTTTTGGAATGCAGCCCAAATCGGGTTGTAGACTCCATCCAA 60 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 |||||||| ||| |||||||||||||| ||||||| | || ||||||||||||| Sbjct 59 GGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAG 2 >seq271959 Length=329 Score = 86.0 bits (94), Expect = 3e-14 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 || || |||||||| ||| |||||||||||||| ||||||| |||| |||||||||| Sbjct 4 TCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAA 63 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATT 184 ||| |||||| ||||| ||| || | ||||||| Sbjct 64 AAGGACTTTGANNNNAGAGTCAAAGAGTGCTTGAAATT 101 >seq376727 Length=304 Score = 78.8 bits (86), Expect = 4e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168 |||||||||||| ||||||| | || ||||||||||||| |||||| ||||||||| | Sbjct 1 AGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCA 60 Query 169 AAAAGCACGTGAAATT 184 || || | ||||||| Sbjct 61 AAGAGTGCTTGAAATT 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2035429023550