Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq72279 201 5e-49
seq1976334 136 2e-29
seq2008938 122 4e-25
seq1629414 120 1e-24
seq43960 116 2e-23
seq37223 111 6e-22
seq58383 109 2e-21
seq26011 109 2e-21
seq1368783 91.5 6e-16
seq271959 86.0 3e-14
seq376727 78.8 4e-12
>seq72279
Length=5110
Score = 201 bits (222), Expect = 5e-49
Identities = 218/283 (77%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| ||||||| |||| | |
Sbjct 2528 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTTTGA 2587
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520
|||| | | ||| || ||| ||| ||| |||| || | | || ||||| |
Sbjct 2588 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 2644
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
|||| |||||| | | || || || |||| ||||| |||| |||||||||||||
Sbjct 2645 GCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 2704
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 2705 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 2764
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 2765 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2807
Score = 149 bits (164), Expect = 3e-33
Identities = 132/165 (80%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||| | | | || || ||
Sbjct 2149 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCCGTCCAAGGC 2208
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
|||||| ||| |||||||||||||| ||||||| | || ||||||||||||| ||||
Sbjct 2209 TAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 2268
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | |||||||| | |||||||||
Sbjct 2269 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 2313
>seq1976334
Length=6671
Score = 136 bits (150), Expect = 2e-29
Identities = 203/281 (72%), Gaps = 8/281 (3%)
Strand=Plus/Plus
Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAAC 466
|| |||||| ||||| ||||||||||||| |||| |||||| || || || |||
Sbjct 578 CCTGTCTTGCAACACAGACCAAGGAGTCTGACATGGGTGCGAGGTGATGAGTTTCGAAAG 637
Query 467 CCGTGC-GCGTAATGAAAGTGA-ACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGACC 523
| | ||| || ||| ||| | | ||| || ||| |||| ||||| | ||
Sbjct 638 GTGGGATGCGCAAGGAAGCTGACAAGCAGGAGG---CCCTCACGGGTCGCACCGCTGTCC 694
Query 524 GATCCTGATGTCTTCG-GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582
| |||| | | || | || | || |||| ||||| ||||||||||| |||| |||
Sbjct 695 AACCCTGCTCTTTTGGTGAACGGTTCGAGTTGGAGCAAGCCTGTTGGGACCTGAAATATG 754
Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642
| |||||||| ||| ||| ||| ||| |||||||||||||||||| ||| |||| |
Sbjct 755 GAGAACTATGTGTGAGCGGGGCGAAACCAAAGGAAACTCTGGTGGAGGATCGAAGCGATA 814
Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| ||||||||| | || || || ||||||||||||||||
Sbjct 815 CTAACGTGCAAATTGTTCTTCTAACTTGGGTATAGGGGCGA 855
Score = 116 bits (128), Expect = 2e-23
Identities = 120/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85
|| || || || |||||||| ||| ||| |||| | ||| | || |||| ||| | |||
Sbjct 171 GAGGCGCCGTCAACGAGTCGGGTTATTTAGGAAAGTAGCCCAAATTGGGCAGTAGACTTC 230
Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145
|| || |||||||| || |||||||||||||| ||||||| | || |||||||||
Sbjct 231 ATCCAAGGCTAAATACAGGTGAGAGACCGATAGCGGACAAGTACTGCGAGGGAAAGATGA 290
Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182
|||| |||||| ||| ||||| ||| || | |||||
Sbjct 291 AAAGGACTTTGAAAATAGAGTCAAAGAGTTCTTGAAA 327
>seq2008938
Length=1131
Score = 122 bits (134), Expect = 4e-25
Identities = 194/276 (70%), Gaps = 7/276 (3%)
Strand=Plus/Plus
Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTCAAACCCGT 470
||||| |||||| || ||||||||| |||| ||||||| ||| | | ||||| |
Sbjct 851 TCTTGAAACACGAACAAAGGAGTCTGACATGCGTGCGAGTCCACGGGCTTTGAAACCTGG 910
Query 471 GC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG--TGCACCATCGACCGATC 527
| || ||| ||| ||| ||| ||||| || | | || ||||| | || | |
Sbjct 911 GATGCTTAAGGAAGCTGAC--GAG-TGGGAGGCCCTCACGGGCTGCACGGCTGGCCAACC 967
Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587
| ||| | | || || | |||| |||| | |||| |||||||||||||||||||
Sbjct 968 CGGATCTTCTATGAAGGGCTCGAGTTGGAGCGCACCTGTCAGGACCCGAAAGATGGTGAA 1027
Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647
|||||| ||| ||| ||||||| | | |||||||||||||||||| ||||
Sbjct 1028 CTATGCGTGAGCGGGGCGAAGCCACACGTAACTCTGGTGGAGGCTCGAAGCGANNNNNNN 1087
Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||||| ||||| | ||||||||||||||||
Sbjct 1088 NNNNAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1123
Score = 107 bits (118), Expect = 8e-21
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85
|| || || || ||||||| ||||||||| |||||||| | || ||| ||| | |
Sbjct 456 GAGGCACCGTCAACGAGTCAGGTTGTTTGGCAATGCAGCCCAAATCGGGCGGTTGGCTCC 515
Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145
|| || |||||||| ||| |||||| || |||| ||||||| || |||||||||
Sbjct 516 CTCCAAGGCTAAATACAGGCGAGAGACAGACAGCGAACAAGTACCCCGAGGGAAAGATGA 575
Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198
|| |||||| ||||||||| ||| || |||||||| | ||||||||
Sbjct 576 AAGAGACTTTGAAAAGAGAGTCAAAGAGTNNNTGAAATTGCCGGGAGGGAAGC 628
>seq1629414
Length=405
Score = 120 bits (132), Expect = 1e-24
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
|||| ||||||||||||||||||||||||| |||| || |||||||||||||||| |
Sbjct 116 CTGTAGGGACCCGAAAGATGGTGAACTATGTCTGAGCGAGGCGAAGCCAGAGGAAACTGT 175
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||||||||||| |||| | || ||||||||||| | ||| | || |||||||| ||
Sbjct 176 GGTGGAGGCTCAAAGCGATACTAACGTGCAAATCGTTTGTCTGACTTTGGTATAGGTGC 234
>seq43960
Length=305
Score = 116 bits (128), Expect = 2e-23
Identities = 86/99 (87%), Gaps = 1/99 (1%)
Strand=Plus/Plus
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
|||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||| |
Sbjct 208 CTGTTGGGACCCGAAAGATGGTGAAC-ATGCCTGAGCGGGGCGAAGGCAGAGGAAACTGT 266
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661
|||||||||||| |||| | || ||||||||||| |||
Sbjct 267 GGTGGAGGCTCGTAGCGATAGTGACGTGCAAATCGTTCG 305
>seq37223
Length=277
Score = 111 bits (122), Expect = 6e-22
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622
|||| |||||| ||||||| ||||||||||||||| | ||| | ||||| | ||||||||
Sbjct 270 CTGTCGGGACCAGAAAGATAGTGAACTATGCCTGAGTGGGGCGGAGCCAAAAGAAACTCT 211
Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682
|||||| ||||| |||| | || | ||||||| ||||| | ||||| |||| ||||
Sbjct 210 GGTGGATGCTCGAAGCGATAATGATGATCAAATCGTTCGTCTGACTTGGGCATAGCGGCG 151
Query 683 A 683
|
Sbjct 150 A 150
>seq58383
Length=1239
Score = 109 bits (120), Expect = 2e-21
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91
|| || || ||| ||||||||||||||| ||| | || || |||| | | | || |
Sbjct 842 CCATCAACAAGTTGAGTTGTTTGGGAATCCAGTACAAATCGGCCGGTAGACTCCATCAAT 901
Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151
| |||||| ||| |||||||||| | ||||||| |||| |||||||||||| |
Sbjct 902 GGTTAAATACAGGCAGGAGACCGATATCAAACAAGTACCGTGAGGGAAAGATGAAAATGA 961
Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||||| ||||||||| ||| || | | ||||||| | |||||||||
Sbjct 962 CTTTGAAAAGAGAGTCAAAGAGTGCATAAAATTGTCGGGAGGGAAGCG 1009
>seq26011
Length=1192
Score = 109 bits (120), Expect = 2e-21
Identities = 104/132 (79%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 540 GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAAT 599
|| || ||||| | ||||| | ||| |||| | ||||||||||||||||||| |||
Sbjct 1062 GAAGGGTTTGATTT-GAGCACACGTGTCGGGAACAGAAAGATGGTGAACTATGCATGAGC 1120
Query 600 AGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659
||||||||| ||||||||||||||||||||||| | || | || ||||||||||| |
Sbjct 1121 GGGGTGAAGCGGGAGGAAACTCTGGTGGAGGCTCGAAACGATACTTACGTGCAAATCGTT 1180
Query 660 CGTCAAATTTGG 671
||| | ||||
Sbjct 1181 TGTCTGACTTGG 1192
>seq1368783
Length=201
Score = 91.5 bits (100), Expect = 6e-16
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91
|| || || ||||| |||||| |||||||||| | || ||| ||| | | | || ||
Sbjct 119 CCGTCAACAAGTCGGCTTGTTTTGGAATGCAGCCCAAATCGGGTTGTAGACTCCATCCAA 60
Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149
|||||||| ||| |||||||||||||| ||||||| | || |||||||||||||
Sbjct 59 GGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAG 2
>seq271959
Length=329
Score = 86.0 bits (94), Expect = 3e-14
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146
|| || |||||||| ||| |||||||||||||| ||||||| |||| ||||||||||
Sbjct 4 TCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAA 63
Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATT 184
||| |||||| ||||| ||| || | |||||||
Sbjct 64 AAGGACTTTGANNNNAGAGTCAAAGAGTGCTTGAAATT 101
>seq376727
Length=304
Score = 78.8 bits (86), Expect = 4e-12
Identities = 63/76 (83%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 109 AGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTA 168
|||||||||||| ||||||| | || ||||||||||||| |||||| ||||||||| |
Sbjct 1 AGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCA 60
Query 169 AAAAGCACGTGAAATT 184
|| || | |||||||
Sbjct 61 AAGAGTGCTTGAAATT 76
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2035429023550
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