Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq2071107 98.7 9e-19
seq287375 89.7 5e-16
>seq2071107
Length=323
Score = 98.7 bits (108), Expect = 9e-19
Identities = 91/114 (80%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| ||||||||||||| ||| || ||||||| ||| |||||| || |||||||||||
Sbjct 133 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 74
Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
| |||||| | |||| | | |||||||| |||| || |||||||| |||||
Sbjct 73 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCC 20
>seq287375
Length=2196
Score = 89.7 bits (98), Expect = 5e-16
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60
|||| ||||||||||||| ||| || |||| ||| |||||||| | |||||| |||
Sbjct 1980 GGCACACGGTGGATGCCTTGGCGCTAGGAGCCGACGAAGGACGCAGCGAACTGCGATAAG 1921
Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
| |||||| || | ||| |||||||| ||| |||||||||||||||||
Sbjct 1920 CCTCGGGGAGCGGTAAGCACGCTTTGATCCGGGGATCTCCGAATGGGGCAACCC 1867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467202175281
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |