Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq94780 179 9e-43 seq795743 170 5e-40 seq77026 158 3e-36 seq817092 125 2e-26 seq832032 120 8e-25 seq1508883 111 4e-22 seq1123124 93.3 1e-16 seq1441153 84.2 6e-14 seq59074 84.2 6e-14 seq831958 82.4 2e-13 seq829586 82.4 2e-13 seq1212451 77.0 8e-12 seq165799 75.2 3e-11 >seq94780 Length=20738 Score = 179 bits (198), Expect = 9e-43 Identities = 230/314 (73%), Gaps = 10/314 (3%) Strand=Plus/Minus Query 28 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCG 87 || |||||||||||||||||||| ||| ||| ||||| ||| ||||||| |||||||| Sbjct 20738 CTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCG 20679 Query 88 TAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGG 144 ||||| | || ||||||| | | || || ||||| | | | || ||| Sbjct 20678 TAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGAAAGTCGC---CAAAAAGTGG 20625 Query 145 -GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGT 203 | | ||| | | || ||| ||||| | |||||| | |||||||| | |||| Sbjct 20624 CGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGT 20565 Query 204 AGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATA 263 || ||||||| ||||||| | | |||||| |||| ||||||||||| | ||||| Sbjct 20564 AGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCC 20505 Query 264 ACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 323 || |||||| | ||||||| |||||||| |||||||||||||||||||||||||| Sbjct 20504 CTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCC 20445 Query 324 ACGCCCTAAACGAT 337 | ||| |||||||| Sbjct 20444 ATGCCGTAAACGAT 20431 >seq795743 Length=230 Score = 170 bits (188), Expect = 5e-40 Identities = 141/172 (82%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 166 GACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATG 225 |||||||||| | || || | ||||||||| ||||||| ||| |||||| |||||| Sbjct 24 GACTAGAGTGCGGTAGGGGAGATTGGAATTCCTGGTGTAGCGGTGGAATGCGCAGATATC 83 Query 226 TGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAA 285 ||||||||||| ||||||||||||| | ||||| ||||||||| | | ||||| Sbjct 84 AGGAGGAACACCGATGGCGAAGGCAGATCTCTGGGCCGTAACTGACGCTGAGGAGCGAAA 143 Query 286 GCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 144 GGGTGGGGAGCAAACAGGCTTAGATACCCTGGTAGTCCACCCCGTAAACGAT 195 >seq77026 Length=2228 Score = 158 bits (174), Expect = 3e-36 Identities = 243/341 (71%), Gaps = 17/341 (5%) Strand=Plus/Plus Query 4 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCA 63 || ||| ||| |||| |||||||||| |||||||||||| ||||||| ||| ||| Sbjct 638 ACTTGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCAGCGGTAAGACGGGGGGG--- 694 Query 64 AGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG----TTGTGTAAGACAGG 119 || ||| ||||||| ||||||||||||| | || |||||| | | ||| || || Sbjct 695 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGCGAATCGGGTA-GAAAG- 752 Query 120 TGTGAAATCCCCGGGCTTAACCTG--GGAATTGCATTTGTGACTGCACGACTAGAGTGTG 177 ||||| | | | || || ||||| || | | || ||| ||||| | Sbjct 753 --TGAAAGTC---GTCAAAAAGTGTCGGAAT-GCTCTCGAAACCAATTCACTTGAGTGAG 806 Query 178 TCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACC 237 |||| |||||||| || ||||| ||||||| ||||||| | | |||||| || Sbjct 807 ATTGAGGAAAGTGGAATTTCATCTGTAGGGGTGAAATCCGTAGATTTACGAAGGAACGCC 866 Query 238 AATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCA 297 || ||||||||| | | || | || |||||| | ||||||| |||||||| Sbjct 867 AAAAGCGAAGGCAACTCTGTGAGTCCCTACAGACGCTGGGGTGCGAAAGCATGGGGAGCG 926 Query 298 AACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATA 338 ||||||||||||||||||||||||||| ||| |||| |||| Sbjct 927 AACAGGATTAGATACCCTGGTAGTCCATGCCGTAAATGATA 967 >seq817092 Length=212 Score = 125 bits (138), Expect = 2e-26 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 149 TATCTGAGGAATAAGCATCGGCTAACTCGGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 90 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 89 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 30 Query 123 GAAATCCCCGGGCTTAACC 141 ||||||| ||||| |||| Sbjct 29 CAAATCCCAGGGCTCAACC 11 >seq832032 Length=212 Score = 120 bits (132), Expect = 8e-25 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 64 TATCTGAGGAATAAGCATCGGCTAACTCAGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 123 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 124 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 183 Query 123 GAAATCCCCGGGCTTAACC 141 ||||||| |||| |||| Sbjct 184 CAAATCCCAAGGCTCAACC 202 >seq1508883 Length=202 Score = 111 bits (122), Expect = 4e-22 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 6 CTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAG 65 |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| |||||| Sbjct 200 CTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAG 141 Query 66 CGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAA 125 ||||| |||||| | || |||||||| ||| | || || | | ||| | | || || Sbjct 140 CGTTATCCGGAATGATTGTGCGTAAAGAGTGTGTCGGTGGCTTTTCAAGTCCGTCGTAAA 81 Query 126 ATCCCCGGGCT 136 ||||| ||||| Sbjct 80 ATCCCAGGGCT 70 >seq1123124 Length=2189 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 6 CTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAG 65 |||| ||||||||| ||||||||| |||||||| |||||||||| || ||| |||||| Sbjct 2188 CTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCTGCCGCGGTAAGACAGAGGATGCAAG 2129 Query 66 CGTTAATCGGAATTACTGGGCGTA 89 ||||| |||||| | |||||||| Sbjct 2128 CGTTATCCGGAATGATTGGGCGTA 2105 >seq1441153 Length=262 Score = 84.2 bits (92), Expect = 6e-14 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 ||||||||| |||||| ||||| |||||| || ||| ||||||||||| | |||| | Sbjct 101 CGGCTAACTCTGTGCCACCAGCCTCGGTAAGACAGAGGATGCAAGCGTTATCCAGAATGA 160 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 |||||||||||| | | ||| || | | ||| | | || ||||||| |||| ||| Sbjct 161 TTGGGCGTAAAGCATTTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCATGGCTCAAC 220 Query 141 C 141 | Sbjct 221 C 221 >seq59074 Length=14123 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 76 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 17 Query 68 TTAATCGGAATTACTG 83 || ||||||| |||| Sbjct 16 TTCTTCGGAATGACTG 1 >seq831958 Length=214 Score = 82.4 bits (90), Expect = 2e-13 Identities = 111/150 (74%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 264 ACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 323 |||||||| || | |||||||| |||||||||| |||||||| |||| ||||||| Sbjct 209 ACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCC 150 Query 324 ACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTT-ACTTCCTTG--GTAACGTAGCT 379 ||| |||||||| ||||| || || | || | || || || || |||||| Sbjct 149 TAGCCGTAAACGATCGATACTAGGTGCTGTGCGACTCGAC--CCGTGCAGTGCTGTAGCT 92 Query 380 AACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||||| |||| ||||||||||| ||| Sbjct 91 AACGCGTTAAGTATCCCGCCTGGGGAGTAC 62 >seq829586 Length=214 Score = 82.4 bits (90), Expect = 2e-13 Identities = 111/150 (74%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 264 ACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 323 |||||||| || | |||||||| |||||||||| |||||||| |||| ||||||| Sbjct 6 ACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCC 65 Query 324 ACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTT-ACTTCCTTG--GTAACGTAGCT 379 ||| |||||||| ||||| || || | || | || || || || |||||| Sbjct 66 TAGCCGTAAACGATTGATACTAGGTGCTGTGCGACTCGAC--CCGTGCAGTGCTGTAGCT 123 Query 380 AACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||||| |||| ||||||||||| ||| Sbjct 124 AACGCGTTAAGTATCCCGCCTGGGGAGTAC 153 >seq1212451 Length=387 Score = 77.0 bits (84), Expect = 8e-12 Identities = 82/109 (75%), Gaps = 7/109 (6%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG------ 61 || ||| |||| |||||||||| |||||||| |||||||||| ||| |||| Sbjct 118 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGTAGCCGCGGTATGACGGGCGGTGGGGCGG 177 Query 62 -CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGT 109 |||| ||| ||||||| ||||||||||||| | || ||| ||||| Sbjct 178 GCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGACGTTGT 226 >seq165799 Length=1184 Score = 75.2 bits (82), Expect = 3e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 |||| |||||||||| |||||||||||||||||||| || ||| ||||| ||| ||| Sbjct 217 AAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTGTTCTTCG 158 Query 75 GAATTACTG 83 |||| |||| Sbjct 157 GAATGACTG 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1262803388704