Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq287375 190 3e-46 seq990274 150 2e-34 seq71432 116 5e-24 seq832397 114 2e-23 seq829795 114 2e-23 seq1213016 113 6e-23 seq939119 109 7e-22 seq832123 109 7e-22 seq831781 109 7e-22 seq830138 109 7e-22 seq2008734 107 3e-21 seq771372 105 9e-21 seq70269 96.9 5e-18 seq1929642 86.0 9e-15 seq94791 77.0 4e-12 seq1828074 73.4 5e-11 >seq287375 Length=2196 Score = 190 bits (210), Expect = 3e-46 Identities = 191/248 (77%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 112 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACTTCGCCTTGCGG-CTTCGCAG 170 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||||||| || ||| ||||| || || | ||| Sbjct 171 AGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGGCCCCCTCGGGCTAT 230 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || | | ||| ||||||||||||||||||||||||||||||||||| Sbjct 231 GAAC--------CCTACCGGGGCGCCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAG 282 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | | |||| |||| | |||||| ||||||| | | | |||||||||||| Sbjct 283 TTCCTTAGCAAGAGTTATCCCGCGCACCTTAGGATTCTCTCCTCGCCTACCTGTGTCGGT 342 Query 241 TTACGGTA 248 || ||||| Sbjct 343 TTGCGGTA 350 >seq990274 Length=1786 Score = 150 bits (166), Expect = 2e-34 Identities = 182/244 (75%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 1737 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 1679 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 1678 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 1621 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1620 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 1570 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| |||||| |||||| || ||||||||||||||| Sbjct 1569 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 1510 Query 245 GGTA 248 |||| Sbjct 1509 GGTA 1506 >seq71432 Length=2975 Score = 116 bits (128), Expect = 5e-24 Identities = 171/238 (72%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| |||||| ||||| | ||||||||| ||||| ||| ||| | | Sbjct 1800 CCTTCCAGGACCAGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCG 1858 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||| ||||||| ||| || | | ||| | | | |||| | Sbjct 1859 TGTGTTTTTAATAAATAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 1916 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||| ||| |||| ||||||||||| ||||| Sbjct 1917 T--------AGGAGAG-CACCCCTTCTCCCGAAATTATGGGGTCATTTTGCCGAGTTCCT 1967 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || |||| | ||| |||| |||||| |||||| || ||||||||| ||||| Sbjct 1968 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTTGGTTT 2025 >seq832397 Length=223 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 47 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 106 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 107 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 154 >seq829795 Length=213 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 143 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 84 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 83 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 36 >seq1213016 Length=417 Score = 113 bits (124), Expect = 6e-23 Identities = 171/243 (70%), Gaps = 19/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||||||| || |||||| | |||| ||| || |||| Sbjct 155 CCTTCCGGCACTGGGCAGGCGTCAACCCCCATACATGGTCTTATAA-CTTTGCGGAGACC 213 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | ||||||| |||||||||||| || || || ||||| || Sbjct 214 TATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTACGACCCCCTT------------ 261 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 |||| || | |||||||||||||||||||||||||| |||||||||| ||||| Sbjct 262 TCGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGAATATTTTGCCGACTTCCT 315 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 316 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 375 Query 246 GTA 248 ||| Sbjct 376 GTA 378 >seq939119 Length=725 Score = 109 bits (120), Expect = 7e-22 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || |||||||||||||||||||||||||||| |||||||||| ||| ||| | |||| Sbjct 268 AGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCTTTAGAGAGAGTTG 209 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || | ||| ||||||||||||| |||||||||||||||| Sbjct 208 TCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 164 >seq832123 Length=234 Score = 109 bits (120), Expect = 7e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| |||||| | |||| | Sbjct 164 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGCTCCTTAGAGAGAGTTGTCT 105 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 104 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 57 >seq831781 Length=234 Score = 109 bits (120), Expect = 7e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| |||||| | |||| | Sbjct 164 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGATCCTTAGAGAGAGTTGTCT 105 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 104 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 57 >seq830138 Length=234 Score = 109 bits (120), Expect = 7e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| |||||| | |||| | Sbjct 71 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGGTCCTTAGAGAGAGTTGTCT 130 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 131 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 178 >seq2008734 Length=439 Score = 107 bits (118), Expect = 3e-21 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 ||||||||||||||||||| |||||||||| | |||||| | || ||||| | | | || Sbjct 9 CCTTCTCCCGAAGTTACGGTACCATTTTGCCTAGTTCCTTCAGCAGAGTTCTCTCAAGCG 68 Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||| || | ||| |||||||||||||||||||||| |||| Sbjct 69 CCTTGGTCTACTCGACCTGACCACCTGTGTCGGTTTCGGGTA 110 >seq771372 Length=246 Score = 105 bits (116), Expect = 9e-21 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| ||||||||||| ||||| |||| ||||||| | |||| || Sbjct 83 GGCACCCCTTCTCCCAAAGTTACGGGGATATTTTACCGAGTTCCTTAGAGAGAGTTGACT 142 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 143 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 190 >seq70269 Length=8252 Score = 96.9 bits (106), Expect = 5e-18 Identities = 170/244 (70%), Gaps = 14/244 (6%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| |||| | |||||||| | ||||| ||| ||| | | Sbjct 3980 CCTTCCAGCACCGGGCAGGTGTCACACTATATACATCAAGTTACCA-CTTAGCAGAGTCA 4038 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||| ||||||| ||| || | | ||| | | | |||| Sbjct 4039 TGTGTTTTTAATAAATAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATTAGAACAT- 4097 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || | ||||| |||||||||||||| |||| ||||||| ||| ||||| Sbjct 4098 ---------AGAAGAG-CACCC-TTCTCCCGAAGTTATGGGGTCATTTTGGCGAGTTCCT 4146 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || | || | ||| |||| |||||| |||||| || || || ||| ||||| Sbjct 4147 TCGACATGGCTCTCTCGATGCGCCCTAGTATACTCTACTTGTTCAACTATGTTGGTTTGG 4206 Query 245 GGTA 248 |||| Sbjct 4207 GGTA 4210 >seq1929642 Length=245 Score = 86.0 bits (94), Expect = 9e-15 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 164 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 223 Query 201 CGAACGCCTTAGTATTCTCTAC 222 || | ||| ||||||||||| Sbjct 224 CGCGCCCCTAGGTATTCTCTAC 245 >seq94791 Length=2561 Score = 77.0 bits (84), Expect = 4e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 143 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 85 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 84 TGTGTTTTTGGTAAACAGTCGC 63 >seq1828074 Length=342 Score = 73.4 bits (80), Expect = 5e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 164 GGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACC 223 ||||| |||||||||| ||||||| | |||| | || | ||| |||||||||||| Sbjct 1 GGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 60 Query 224 TGACCACCTGTGTCGGTTTACGGTA 248 | |||||||||||||||| |||| Sbjct 61 TACCCACCTGTGTCGGTTTCGGGTA 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 680421959973