Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq287375 190 3e-46
seq990274 150 2e-34
seq71432 116 5e-24
seq832397 114 2e-23
seq829795 114 2e-23
seq1213016 113 6e-23
seq939119 109 7e-22
seq832123 109 7e-22
seq831781 109 7e-22
seq830138 109 7e-22
seq2008734 107 3e-21
seq771372 105 9e-21
seq70269 96.9 5e-18
seq1929642 86.0 9e-15
seq94791 77.0 4e-12
seq1828074 73.4 5e-11
>seq287375
Length=2196
Score = 190 bits (210), Expect = 3e-46
Identities = 191/248 (77%), Gaps = 9/248 (4%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| ||||||| ||||||||||||||||| || ||||| ||| ||| | | |||||||
Sbjct 112 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCCTATACTTCGCCTTGCGG-CTTCGCAG 170
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| ||||||||||||| || ||| ||||| || || | |||
Sbjct 171 AGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGGCCCCCTCGGGCTAT 230
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| || | | ||| |||||||||||||||||||||||||||||||||||
Sbjct 231 GAAC--------CCTACCGGGGCGCCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAG 282
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | | |||| |||| | |||||| ||||||| | | | ||||||||||||
Sbjct 283 TTCCTTAGCAAGAGTTATCCCGCGCACCTTAGGATTCTCTCCTCGCCTACCTGTGTCGGT 342
Query 241 TTACGGTA 248
|| |||||
Sbjct 343 TTGCGGTA 350
>seq990274
Length=1786
Score = 150 bits (166), Expect = 2e-34
Identities = 182/244 (75%), Gaps = 13/244 (5%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 1737 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 1679
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 1678 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 1621
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1620 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 1570
Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
| || |||| | ||| |||| |||||| |||||| || |||||||||||||||
Sbjct 1569 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 1510
Query 245 GGTA 248
||||
Sbjct 1509 GGTA 1506
>seq71432
Length=2975
Score = 116 bits (128), Expect = 5e-24
Identities = 171/238 (72%), Gaps = 13/238 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||| |||||| ||||| | ||||||||| ||||| ||| ||| | |
Sbjct 1800 CCTTCCAGGACCAGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCG 1858
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||| ||||||| ||| || | | ||| | | | |||| |
Sbjct 1859 TGTGTTTTTAATAAATAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 1916
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | |||||||||||||||| ||| |||| ||||||||||| |||||
Sbjct 1917 T--------AGGAGAG-CACCCCTTCTCCCGAAATTATGGGGTCATTTTGCCGAGTTCCT 1967
Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| || |||| | ||| |||| |||||| |||||| || ||||||||| |||||
Sbjct 1968 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTTGGTTT 2025
>seq832397
Length=223
Score = 114 bits (126), Expect = 2e-23
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 47 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 106
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 107 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 154
>seq829795
Length=213
Score = 114 bits (126), Expect = 2e-23
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 143 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 84
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 83 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 36
>seq1213016
Length=417
Score = 113 bits (124), Expect = 6e-23
Identities = 171/243 (70%), Gaps = 19/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| |||||||||||| || |||||| | |||| ||| || ||||
Sbjct 155 CCTTCCGGCACTGGGCAGGCGTCAACCCCCATACATGGTCTTATAA-CTTTGCGGAGACC 213
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
| ||||||| |||||||||||| || || || ||||| ||
Sbjct 214 TATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTACGACCCCCTT------------ 261
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
|||| || | |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 262 TCGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGAATATTTTGCCGACTTCCT 315
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 316 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 375
Query 246 GTA 248
|||
Sbjct 376 GTA 378
>seq939119
Length=725
Score = 109 bits (120), Expect = 7e-22
Identities = 87/105 (83%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197
|| |||||||||||||||||||||||||||| |||||||||| ||| ||| | ||||
Sbjct 268 AGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCTTTAGAGAGAGTTG 209
Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| || | ||| ||||||||||||| ||||||||||||||||
Sbjct 208 TCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 164
>seq832123
Length=234
Score = 109 bits (120), Expect = 7e-22
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| |||||| | |||| |
Sbjct 164 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGCTCCTTAGAGAGAGTTGTCT 105
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 104 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 57
>seq831781
Length=234
Score = 109 bits (120), Expect = 7e-22
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| |||||| | |||| |
Sbjct 164 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGATCCTTAGAGAGAGTTGTCT 105
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 104 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 57
>seq830138
Length=234
Score = 109 bits (120), Expect = 7e-22
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| |||||| | |||| |
Sbjct 71 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGGTCCTTAGAGAGAGTTGTCT 130
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 131 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 178
>seq2008734
Length=439
Score = 107 bits (118), Expect = 3e-21
Identities = 85/102 (83%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206
||||||||||||||||||| |||||||||| | |||||| | || ||||| | | | ||
Sbjct 9 CCTTCTCCCGAAGTTACGGTACCATTTTGCCTAGTTCCTTCAGCAGAGTTCTCTCAAGCG 68
Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|||| || | ||| |||||||||||||||||||||| ||||
Sbjct 69 CCTTGGTCTACTCGACCTGACCACCTGTGTCGGTTTCGGGTA 110
>seq771372
Length=246
Score = 105 bits (116), Expect = 9e-21
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||| ||||||||||| ||||| |||| ||||||| | |||| ||
Sbjct 83 GGCACCCCTTCTCCCAAAGTTACGGGGATATTTTACCGAGTTCCTTAGAGAGAGTTGACT 142
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 143 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 190
>seq70269
Length=8252
Score = 96.9 bits (106), Expect = 5e-18
Identities = 170/244 (70%), Gaps = 14/244 (6%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| |||| | |||||||| | ||||| ||| ||| | |
Sbjct 3980 CCTTCCAGCACCGGGCAGGTGTCACACTATATACATCAAGTTACCA-CTTAGCAGAGTCA 4038
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||| ||||||| ||| || | | ||| | | | ||||
Sbjct 4039 TGTGTTTTTAATAAATAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATTAGAACAT- 4097
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
|| || | ||||| |||||||||||||| |||| ||||||| ||| |||||
Sbjct 4098 ---------AGAAGAG-CACCC-TTCTCCCGAAGTTATGGGGTCATTTTGGCGAGTTCCT 4146
Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
| || | || | ||| |||| |||||| |||||| || || || ||| |||||
Sbjct 4147 TCGACATGGCTCTCTCGATGCGCCCTAGTATACTCTACTTGTTCAACTATGTTGGTTTGG 4206
Query 245 GGTA 248
||||
Sbjct 4207 GGTA 4210
>seq1929642
Length=245
Score = 86.0 bits (94), Expect = 9e-15
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 164 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 223
Query 201 CGAACGCCTTAGTATTCTCTAC 222
|| | ||| |||||||||||
Sbjct 224 CGCGCCCCTAGGTATTCTCTAC 245
>seq94791
Length=2561
Score = 77.0 bits (84), Expect = 4e-12
Identities = 67/82 (82%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 143 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 85
Query 66 TGTGTTTTTAGTAAACAGTCGC 87
||||||||| ||||||||||||
Sbjct 84 TGTGTTTTTGGTAAACAGTCGC 63
>seq1828074
Length=342
Score = 73.4 bits (80), Expect = 5e-11
Identities = 67/85 (79%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 164 GGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACC 223
||||| |||||||||| ||||||| | |||| | || | ||| ||||||||||||
Sbjct 1 GGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 60
Query 224 TGACCACCTGTGTCGGTTTACGGTA 248
| |||||||||||||||| ||||
Sbjct 61 TACCCACCTGTGTCGGTTTCGGGTA 85
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 680421959973
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |