Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq829795 91.5 2e-16
seq832123 87.8 2e-15
seq831781 87.8 2e-15
seq830138 87.8 2e-15
seq287375 84.2 2e-14
seq2008734 75.2 1e-11
seq990274 75.2 1e-11
seq94791 73.4 4e-11
>seq829795
Length=213
Score = 91.5 bits (100), Expect = 2e-16
Identities = 87/110 (79%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| ||
Sbjct 97 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 156
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 157 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 205
>seq832123
Length=234
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
|||||| || |||||| | ||| |||||||||||| || |||| || | || ||| ||
Sbjct 118 TAAGGAGCTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 177
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 178 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 226
>seq831781
Length=234
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
|||||| || |||||| | ||| |||||||||||| || |||| || | || ||| ||
Sbjct 118 TAAGGATCTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 177
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 178 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 226
>seq830138
Length=234
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
|||||| || |||||| | ||| |||||||||||| || |||| || | || ||| ||
Sbjct 117 TAAGGACCTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 58
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 57 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 9
>seq287375
Length=2196
Score = 84.2 bits (92), Expect = 2e-14
Identities = 130/188 (69%), Gaps = 17/188 (9%)
Strand=Plus/Minus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
||||||| |||||| |||| || | || || |||||| || | | || | ||
Sbjct 347 CGCAAACCGACACAGGTAGGCGAGGAGAGAATCCTAAGGTGCGCGGGATAACTCTTGCTA 288
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA-------------AGGGTCCCTA 128
||||||| |||||| || ||| |||||||||||| || ||||| | ||
Sbjct 287 AGGAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGCGCCCCGGTAGGGTTCATA 228
Query 129 CCCAGAAATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGC 188
|| || || || ||||| ||| ||| ||| || |||||||| |||||||||||| |
Sbjct 227 GCCCGA----GGGGGCCGCAGTGAAAAGGCCCAAGCGACTGTTTAGCAAAAACACAGGTC 172
Query 189 TGTGCCAA 196
| ||| ||
Sbjct 171 TCTGCGAA 164
>seq2008734
Length=439
Score = 75.2 bits (82), Expect = 1e-11
Identities = 73/94 (78%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || ||| ||| || || || |||||||||||| ||| | | ||||
Sbjct 104 AAACCGACACAGGTGGTCAGGTCGAGTAGACCAAGGCGCTTGAGAGAACTCTGCTGAAGG 45
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118
||||||||||| || | |||||||||||| ||
Sbjct 44 AACTAGGCAAAATGGTACCGTAACTTCGGGAGAA 11
>seq990274
Length=1786
Score = 75.2 bits (82), Expect = 1e-11
Identities = 78/101 (77%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82
||||| |||||| || | || || ||||||| ||||| | ||| ||| || | ||
Sbjct 1511 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 1570
Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
|||||| |||||| |||||| |||||||||||| || ||||
Sbjct 1571 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 1611
>seq94791
Length=2561
Score = 73.4 bits (80), Expect = 4e-11
Identities = 71/90 (79%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 100 CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTC 159
||| |||||||||||| || |||| || | || ||| ||| || ||||| || ||| |
Sbjct 1 CCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGGG-GGTCGCAGTGACCAGGCC 59
Query 160 CAGGCAACTGTTTAACAAAAACACAGGGCT 189
| ||| |||||||| |||||||||||| ||
Sbjct 60 CGGGCGACTGTTTACCAAAAACACAGGTCT 89
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 520507121454
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |