Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq829795 91.5 2e-16 seq832123 87.8 2e-15 seq831781 87.8 2e-15 seq830138 87.8 2e-15 seq287375 84.2 2e-14 seq2008734 75.2 1e-11 seq990274 75.2 1e-11 seq94791 73.4 4e-11 >seq829795 Length=213 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 97 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 156 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 157 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 205 >seq832123 Length=234 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 |||||| || |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 118 TAAGGAGCTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 177 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 178 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 226 >seq831781 Length=234 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 |||||| || |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 118 TAAGGATCTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 177 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 178 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 226 >seq830138 Length=234 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 |||||| || |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 117 TAAGGACCTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 58 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 57 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 9 >seq287375 Length=2196 Score = 84.2 bits (92), Expect = 2e-14 Identities = 130/188 (69%), Gaps = 17/188 (9%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| |||| || | || || |||||| || | | || | || Sbjct 347 CGCAAACCGACACAGGTAGGCGAGGAGAGAATCCTAAGGTGCGCGGGATAACTCTTGCTA 288 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA-------------AGGGTCCCTA 128 ||||||| |||||| || ||| |||||||||||| || ||||| | || Sbjct 287 AGGAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGCGCCCCGGTAGGGTTCATA 228 Query 129 CCCAGAAATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGC 188 || || || || ||||| ||| ||| ||| || |||||||| |||||||||||| | Sbjct 227 GCCCGA----GGGGGCCGCAGTGAAAAGGCCCAAGCGACTGTTTAGCAAAAACACAGGTC 172 Query 189 TGTGCCAA 196 | ||| || Sbjct 171 TCTGCGAA 164 >seq2008734 Length=439 Score = 75.2 bits (82), Expect = 1e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || ||| ||| || || || |||||||||||| ||| | | |||| Sbjct 104 AAACCGACACAGGTGGTCAGGTCGAGTAGACCAAGGCGCTTGAGAGAACTCTGCTGAAGG 45 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||||||| || | |||||||||||| || Sbjct 44 AACTAGGCAAAATGGTACCGTAACTTCGGGAGAA 11 >seq990274 Length=1786 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| ||||| | ||| ||| || | || Sbjct 1511 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 1570 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||||| |||||| |||||| |||||||||||| || |||| Sbjct 1571 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 1611 >seq94791 Length=2561 Score = 73.4 bits (80), Expect = 4e-11 Identities = 71/90 (79%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 100 CCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTC 159 ||| |||||||||||| || |||| || | || ||| ||| || ||||| || ||| | Sbjct 1 CCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGGG-GGTCGCAGTGACCAGGCC 59 Query 160 CAGGCAACTGTTTAACAAAAACACAGGGCT 189 | ||| |||||||| |||||||||||| || Sbjct 60 CGGGCGACTGTTTACCAAAAACACAGGTCT 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520507121454