Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq990274 91.5 1e-16
seq287375 91.5 1e-16
seq94791 87.8 2e-15
seq70269 86.0 6e-15
seq1213016 75.2 1e-11
seq71432 73.4 4e-11
>seq990274
Length=1786
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 1644 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 1703
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 1704 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 1738
>seq287375
Length=2196
Score = 91.5 bits (100), Expect = 1e-16
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119
||||| ||||||||||| |||||||||| |||||| || || ||| || |||||
Sbjct 205 AGGCCCAAGCGACTGTTTAGCAAAAACACAGGTCTCTGCGAAGCCGCAAGGCGAAGTATA 146
Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| ||||||||||||||||| ||||||||||
Sbjct 145 GGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAA 113
>seq94791
Length=2561
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 42 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 101
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 102 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 147
>seq70269
Length=8252
Score = 86.0 bits (94), Expect = 6e-15
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | |||||| ||||||||||||||| ||||||| || | || | ||
Sbjct 4073 ATACCAGGGGGTAGCGACTATTTATTAAAAACACATGACTCTGCTAAGTGGTAACTTGAT 4014
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
||||| ||||||| |||||||||||| |||||||
Sbjct 4013 GTATATAGTGTGACACCTGCCCGGTGCTGGAAGGT 3979
>seq1213016
Length=417
Score = 75.2 bits (82), Expect = 1e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| ||||||| || ||| |||||
Sbjct 256 GGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACATAGGTCTCCGCAAAGTTAT 197
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 196 AAGACCATGTATGGGGGTTGACGCCTGCCCAGTGCCGGAAGGTCAA 151
>seq71432
Length=2975
Score = 73.4 bits (80), Expect = 4e-11
Identities = 73/95 (77%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | |||||| ||||||||||||||| ||||||| || | || ||
Sbjct 1893 ATACCAGGGGGTAGCGACTATTTATTAAAAACACACGACTCTGCTAAGTGGTAACACGAT 1834
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||| ||| | |||||||
Sbjct 1833 GTATAGAGTCTGACACCTGCCTGGTCCTGGAAGGT 1799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 467202175281
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |