Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq990274 91.5 1e-16 seq287375 91.5 1e-16 seq94791 87.8 2e-15 seq70269 86.0 6e-15 seq1213016 75.2 1e-11 seq71432 73.4 4e-11 >seq990274 Length=1786 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 1644 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 1703 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 1704 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 1738 >seq287375 Length=2196 Score = 91.5 bits (100), Expect = 1e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| ||||||||||| |||||||||| |||||| || || ||| || ||||| Sbjct 205 AGGCCCAAGCGACTGTTTAGCAAAAACACAGGTCTCTGCGAAGCCGCAAGGCGAAGTATA 146 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| ||||||||||||||||| |||||||||| Sbjct 145 GGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAA 113 >seq94791 Length=2561 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 42 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 101 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 102 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 147 >seq70269 Length=8252 Score = 86.0 bits (94), Expect = 6e-15 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||| ||||||||||||||| ||||||| || | || | || Sbjct 4073 ATACCAGGGGGTAGCGACTATTTATTAAAAACACATGACTCTGCTAAGTGGTAACTTGAT 4014 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 ||||| ||||||| |||||||||||| ||||||| Sbjct 4013 GTATATAGTGTGACACCTGCCCGGTGCTGGAAGGT 3979 >seq1213016 Length=417 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| ||||||| || ||| ||||| Sbjct 256 GGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACATAGGTCTCCGCAAAGTTAT 197 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 196 AAGACCATGTATGGGGGTTGACGCCTGCCCAGTGCCGGAAGGTCAA 151 >seq71432 Length=2975 Score = 73.4 bits (80), Expect = 4e-11 Identities = 73/95 (77%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||| ||||||||||||||| ||||||| || | || || Sbjct 1893 ATACCAGGGGGTAGCGACTATTTATTAAAAACACACGACTCTGCTAAGTGGTAACACGAT 1834 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||| ||| | ||||||| Sbjct 1833 GTATAGAGTCTGACACCTGCCTGGTCCTGGAAGGT 1799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467202175281