Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq72279 300 2e-79
seq31025 170 3e-40
seq39360 140 5e-31
seq46372 109 9e-22
seq149897 86.0 1e-14
seq676 77.0 5e-12
>seq72279
Length=5110
Score = 300 bits (332), Expect = 2e-79
Identities = 224/260 (86%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60
|||||| || | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 919
Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120
||||||||||||||||||||||| | | || | | | |||||||||||||||||| |||
Sbjct 918 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 859
Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
| | || | || |||| |||||||| | ||||||||||||||| ||||||
Sbjct 858 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 799
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 739
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||| ||||||
Sbjct 738 GAAAGAGCTCTCAGTCTGTC 719
>seq31025
Length=412
Score = 170 bits (188), Expect = 3e-40
Identities = 161/203 (79%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 58 CAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC 117
|||||||||||||||||||||||| ||| | || | | | |||||||| |||||||||
Sbjct 412 CAGACCTGTTATTGCCTCAAACTTTCATCGCCTAAATGGCGATAGTCCCGCTAAGAAGCT 353
Query 118 AGCCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175
||| | | || | || | |||| || ||| | | || ||| |||||| | ||
Sbjct 352 AGCTATGGAGGGATGGCTCCAAATAGCTAGTTTGCATGCTGAGATCTTGTTCGTCAACGA 293
Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235
||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 292 AATTAACAAGACAAATCGCTCCACCAACTAAGAACAGCAATGCACCACCACCCATAGAAT 233
Query 236 CAAGAAAGAGCTATCAATCTGTC 258
|||||| ||||| || ||||||
Sbjct 232 CAAGAATGAGCTCACAGTCTGTC 210
>seq39360
Length=237
Score = 140 bits (154), Expect = 5e-31
Identities = 165/229 (72%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 9 TCAGTGTAGCGTGCGTGCAACCCAGAACATCTAAGGGTATCACACACCTGTTATTGCCTC 68
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA----CCAACCATA 131
|||||||| | | || | | ||||||| ||||||||||| | | | ||
Sbjct 69 AAACTTCCGTCGCCTAAACTCGGATAGTCCATCTAAGAAGCCTGTGATTGTAGAGGGATG 128
Query 132 G-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190
| || | |||| ||||||| | |||||| |||||||
Sbjct 129 GCTCCACATAGCTAGCTAGCAGGCTGAGGTCTNNNNNNNNNNNNNNNNNNNNNAGACAAA 188
Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
| |||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 189 TAGCTCCACCAACTAAGAATGGACATGCACCACCACCCATAAAATCAAG 237
>seq46372
Length=245
Score = 109 bits (120), Expect = 9e-22
Identities = 84/100 (84%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207
|||||| | |||||||||| |||| | |||||||||||| ||| | | ||||||||||
Sbjct 1 AGCAGGCTGAGGTCTCGTTGGTTAACAGAATTAACCAGAAAAACCGTTGTACCAACTAAG 60
Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|| || ||| | ||||||||||||| ||||||||||||||
Sbjct 61 AATGGACATTCCCCACCACCCATAGCATCAAGAAAGAGCT 100
>seq149897
Length=976
Score = 86.0 bits (94), Expect = 1e-14
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 24 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 78
||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 922 GCGCGCGTGCGGCCCAGAATATCTAAGGGCATCACACACCTGTTAATGCCTCAAA 976
>seq676
Length=222
Score = 77.0 bits (84), Expect = 5e-12
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 65
|||||||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct 50 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780760682181
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |