Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq72279 300 2e-79 seq31025 170 3e-40 seq39360 140 5e-31 seq46372 109 9e-22 seq149897 86.0 1e-14 seq676 77.0 5e-12 >seq72279 Length=5110 Score = 300 bits (332), Expect = 2e-79 Identities = 224/260 (86%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 TACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 919 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||| | | || | | | |||||||||||||||||| ||| Sbjct 918 ACCTGTTATTGCCTCAAACTTCCGTCGCCTAAACGGCGATAGTCCCTCTAAGAAGCTAGC 859 Query 121 CACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | || | || |||| |||||||| | ||||||||||||||| |||||| Sbjct 858 TGCGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAAT 799 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 798 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 739 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 738 GAAAGAGCTCTCAGTCTGTC 719 >seq31025 Length=412 Score = 170 bits (188), Expect = 3e-40 Identities = 161/203 (79%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 58 CAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC 117 |||||||||||||||||||||||| ||| | || | | | |||||||| ||||||||| Sbjct 412 CAGACCTGTTATTGCCTCAAACTTTCATCGCCTAAATGGCGATAGTCCCGCTAAGAAGCT 353 Query 118 AGCCACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 ||| | | || | || | |||| || ||| | | || ||| |||||| | || Sbjct 352 AGCTATGGAGGGATGGCTCCAAATAGCTAGTTTGCATGCTGAGATCTTGTTCGTCAACGA 293 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct 292 AATTAACAAGACAAATCGCTCCACCAACTAAGAACAGCAATGCACCACCACCCATAGAAT 233 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||| || |||||| Sbjct 232 CAAGAATGAGCTCACAGTCTGTC 210 >seq39360 Length=237 Score = 140 bits (154), Expect = 5e-31 Identities = 165/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||| Sbjct 9 TCAGTGTAGCGTGCGTGCAACCCAGAACATCTAAGGGTATCACACACCTGTTATTGCCTC 68 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA----CCAACCATA 131 |||||||| | | || | | ||||||| ||||||||||| | | | || Sbjct 69 AAACTTCCGTCGCCTAAACTCGGATAGTCCATCTAAGAAGCCTGTGATTGTAGAGGGATG 128 Query 132 G-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | || | |||| ||||||| | |||||| ||||||| Sbjct 129 GCTCCACATAGCTAGCTAGCAGGCTGAGGTCTNNNNNNNNNNNNNNNNNNNNNAGACAAA 188 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 | |||||||||||||||| || |||||||||||||||||| ||||||| Sbjct 189 TAGCTCCACCAACTAAGAATGGACATGCACCACCACCCATAAAATCAAG 237 >seq46372 Length=245 Score = 109 bits (120), Expect = 9e-22 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148 AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG 207 |||||| | |||||||||| |||| | |||||||||||| ||| | | |||||||||| Sbjct 1 AGCAGGCTGAGGTCTCGTTGGTTAACAGAATTAACCAGAAAAACCGTTGTACCAACTAAG 60 Query 208 AACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 || || ||| | ||||||||||||| |||||||||||||| Sbjct 61 AATGGACATTCCCCACCACCCATAGCATCAAGAAAGAGCT 100 >seq149897 Length=976 Score = 86.0 bits (94), Expect = 1e-14 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 24 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 78 ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| Sbjct 922 GCGCGCGTGCGGCCCAGAATATCTAAGGGCATCACACACCTGTTAATGCCTCAAA 976 >seq676 Length=222 Score = 77.0 bits (84), Expect = 5e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTG 65 |||||||||| |||||||||||| | |||||||||||||||||||||||| Sbjct 50 TCAGTGTAGCACGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780760682181