Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq72279 399 4e-109
seq902113 300 3e-79
seq777269 230 4e-58
seq1674584 226 5e-57
seq2027166 210 4e-52
seq44269 205 2e-50
seq612638 120 5e-25
seq703239 113 8e-23
seq1972383 98.7 2e-18
seq2058816 82.4 1e-13
seq94791 73.4 7e-11
>seq72279
Length=5110
Score = 399 bits (442), Expect = 4e-109
Identities = 265/293 (90%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | | | || |||||||||||||||||||||||||||||||
Sbjct 4915 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 4857
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 4856 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 4797
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4796 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 4737
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 4736 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 4677
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||| | ||| | |||||||||||||||||||| |||||| |||| ||||||
Sbjct 4676 CAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 4624
>seq902113
Length=1366
Score = 300 bits (332), Expect = 3e-79
Identities = 236/283 (83%), Gaps = 1/283 (0%)
Strand=Plus/Plus
Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69
||||||| || ||| | || ||| |||||||||||||||| ||||| ||||| ||
Sbjct 958 GAATTACTATCGGGAC-ACTGTCGTCAGTAGGGTAAAACTNNNNNNTCTCACGACGGCCT 1016
Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129
|||||||||||| |||||||||| |||||||||||||||||| ||| ||||| ||||
Sbjct 1017 AAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTTAATTCCGCTT 1076
Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189
| ||||| ||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 1077 CACAATGATCGGAAGAGCCGACATCGAAGGACCAAAAAGCAATGTCGCTATGAACTCTTT 1136
Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249
|||||||||||| |||||||| ||||||| ||||| || |||||||||| ||||| |
Sbjct 1137 GCTGCCACAAGCTAGTTATCCATGTGGTATCTTTTTTGACACCTCTAGCTTCAAACTCTC 1196
Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
| | ||| ||||| |||||||||| ||||||||||| |||||
Sbjct 1197 AAGATCTAGAGGATTGATAGGCCACGCTTTCATGGTTCGTATT 1239
>seq777269
Length=210
Score = 230 bits (254), Expect = 4e-58
Identities = 176/211 (83%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122
||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||
Sbjct 210 ACGGTCTAAACCCAGCTCACGTTCC-TATTGGTGGGTGAACAATCCAACACTTTGTCAAT 152
Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182
|||||||| ||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 151 TCTGCTTCACAATGATAGAAAGAGCCGATATTGAAGGATCAAAAAGCAACGTCGCNNNNN 92
Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242
||||||||||||||||||||| |||| ||||||||| | |||||||||| |||
Sbjct 91 NNNNNNNGCTGCCACAAGCCAGTTATCCTTGTGTTAACTTTTCAGACACCTCTAGCTTCA 32
Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCA 273
|| | ||| | |||||||||||||||||||
Sbjct 31 AACTCCGAAGATCTAAAGGATCGATAGGCCA 1
>seq1674584
Length=230
Score = 226 bits (250), Expect = 5e-57
Identities = 168/195 (86%), Gaps = 1/195 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| || | | | || |||||||||||||||||||||||||| |||
Sbjct 194 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGACTCT 136
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| ||
Sbjct 135 GGACGGTCTCAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 76
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| ||||||| ||||||||| || |||||||||||||| || ||||||||
Sbjct 75 ATTCTGCTTCATAATGATAGAAAGAGCCGATATTGAAGGATCAAAAAGTAATGTCGCTAT 16
Query 181 GAACGCTTGGCTGCC 195
|||||||||||||||
Sbjct 15 GAACGCTTGGCTGCC 1
>seq2027166
Length=333
Score = 210 bits (232), Expect = 4e-52
Identities = 149/171 (87%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183
||||||| |||||||||||||| ||||||||| ||||||||| ||| ||||||||||
Sbjct 1 CTGCTTCACAATGATAGGAAGAGCTCACATCGAAGAATCAAAAAGAAACCTCGCTATGAA 60
Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243
| ||||||||||||||||||||||||| ||||||||| |||||| |||||||||| | ||
Sbjct 61 CACTTGGCTGCCACAAGCCAGTTATCCGTGTGGTAACCTTTCTGACACCTCTAGCTTTAA 120
Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||||| | |||||||||||||||||||| |||||| || | |||||||
Sbjct 121 ACTTCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGGGTCGTATTCA 171
>seq44269
Length=487
Score = 205 bits (226), Expect = 2e-50
Identities = 148/171 (87%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183
||||||| |||||||||||||| |||||||| ||||||||| ||| ||||||||||
Sbjct 1 CTGCTTCACAATGATAGGAAGAGCTCGCATCGAAGAATCAAAAAGAAACCTCGCTATGAA 60
Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243
||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| | ||
Sbjct 61 CGCTTGGCTGCCACAAGCCAGTTATCCGTGTGGTAACCTTTCTGACACCTCTAGATTTAA 120
Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||||| | |||||||||||||||||||| |||||| || | |||||||
Sbjct 121 ACTTCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGGGTCGTATTCA 171
>seq612638
Length=235
Score = 120 bits (132), Expect = 5e-25
Identities = 81/91 (89%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263
|||||||||||||||||||||||| |||||||||| ||||| | ||| | |||||||||
Sbjct 235 GTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGAT 176
Query 264 CGATAGGCCACACTTTCATGGTTTGTATTCA 294
||||||||||| |||||| |||| |||||||
Sbjct 175 CGATAGGCCACGCTTTCACGGTTCGTATTCA 145
>seq703239
Length=235
Score = 113 bits (124), Expect = 8e-23
Identities = 79/91 (87%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263
|||||||||||||||||||||||| |||||||||| ||||| | | | |||||||||
Sbjct 235 GTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCNNAAGATCTAAAGGAT 176
Query 264 CGATAGGCCACACTTTCATGGTTTGTATTCA 294
||||||||||| |||||| |||| |||||||
Sbjct 175 CGATAGGCCACGCTTTCACGGTTCGTATTCA 145
>seq1972383
Length=210
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86
|| |||||||||||||||||| |||| ||||||| | |||||||||||| ||||| |||
Sbjct 77 ACTGTCATCAGTAGGGTAAAAATAACATGTCTCACAATGGTCTAAACCCAACTCACATTC 18
Query 87 CCTATTAGTGGGTGAAC 103
|||||| ||||||||||
Sbjct 17 CCTATTGGTGGGTGAAC 1
>seq2058816
Length=374
Score = 82.4 bits (90), Expect = 1e-13
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86
|| ||||||| ||||||||| |||||||| |||| ||||||||||||||| |||||||||
Sbjct 17 ACTGTCATCAATAGGGTAAATCTAACCTGCCTCACGACGGTCTAAACCCAACTCACGTTC 76
>seq94791
Length=2561
Score = 73.4 bits (80), Expect = 7e-11
Identities = 122/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||||||| || |||| |||| ||||| |||||
Sbjct 905 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 846
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| | | ||| | | | |||||||||||||||| | ||||
Sbjct 845 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 789
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| | || || ||||| | |||| ||||||||| |||||||||
Sbjct 788 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 840336798492
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