Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq72279 399 4e-109 seq902113 300 3e-79 seq777269 230 4e-58 seq1674584 226 5e-57 seq2027166 210 4e-52 seq44269 205 2e-50 seq612638 120 5e-25 seq703239 113 8e-23 seq1972383 98.7 2e-18 seq2058816 82.4 1e-13 seq94791 73.4 7e-11 >seq72279 Length=5110 Score = 399 bits (442), Expect = 4e-109 Identities = 265/293 (90%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || ||||||||||||||||||||||||||||||| Sbjct 4915 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 4857 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 4856 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 4797 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4796 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 4737 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 4736 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 4677 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| | ||| | |||||||||||||||||||| |||||| |||| |||||| Sbjct 4676 CAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 4624 >seq902113 Length=1366 Score = 300 bits (332), Expect = 3e-79 Identities = 236/283 (83%), Gaps = 1/283 (0%) Strand=Plus/Plus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 ||||||| || ||| | || ||| |||||||||||||||| ||||| ||||| || Sbjct 958 GAATTACTATCGGGAC-ACTGTCGTCAGTAGGGTAAAACTNNNNNNTCTCACGACGGCCT 1016 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||| |||||||||| |||||||||||||||||| ||| ||||| |||| Sbjct 1017 AAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTTAATTCCGCTT 1076 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 | ||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||| Sbjct 1077 CACAATGATCGGAAGAGCCGACATCGAAGGACCAAAAAGCAATGTCGCTATGAACTCTTT 1136 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 |||||||||||| |||||||| ||||||| ||||| || |||||||||| ||||| | Sbjct 1137 GCTGCCACAAGCTAGTTATCCATGTGGTATCTTTTTTGACACCTCTAGCTTCAAACTCTC 1196 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | | ||| ||||| |||||||||| ||||||||||| ||||| Sbjct 1197 AAGATCTAGAGGATTGATAGGCCACGCTTTCATGGTTCGTATT 1239 >seq777269 Length=210 Score = 230 bits (254), Expect = 4e-58 Identities = 176/211 (83%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 ||||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||| Sbjct 210 ACGGTCTAAACCCAGCTCACGTTCC-TATTGGTGGGTGAACAATCCAACACTTTGTCAAT 152 Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 |||||||| ||||||| ||||||||| || ||||||||||||||||||||||| Sbjct 151 TCTGCTTCACAATGATAGAAAGAGCCGATATTGAAGGATCAAAAAGCAACGTCGCNNNNN 92 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||||||||||||||||||||| |||| ||||||||| | |||||||||| ||| Sbjct 91 NNNNNNNGCTGCCACAAGCCAGTTATCCTTGTGTTAACTTTTCAGACACCTCTAGCTTCA 32 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCA 273 || | ||| | ||||||||||||||||||| Sbjct 31 AACTCCGAAGATCTAAAGGATCGATAGGCCA 1 >seq1674584 Length=230 Score = 226 bits (250), Expect = 5e-57 Identities = 168/195 (86%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | | || |||||||||||||||||||||||||| ||| Sbjct 194 TACTAGGTTGAATTACTATCGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGACTCT 136 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||| ||||||||||| |||||||||| |||||||||||||||||| ||| || Sbjct 135 GGACGGTCTCAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 76 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||| ||||||||| || |||||||||||||| || |||||||| Sbjct 75 ATTCTGCTTCATAATGATAGAAAGAGCCGATATTGAAGGATCAAAAAGTAATGTCGCTAT 16 Query 181 GAACGCTTGGCTGCC 195 ||||||||||||||| Sbjct 15 GAACGCTTGGCTGCC 1 >seq2027166 Length=333 Score = 210 bits (232), Expect = 4e-52 Identities = 149/171 (87%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 ||||||| |||||||||||||| ||||||||| ||||||||| ||| |||||||||| Sbjct 1 CTGCTTCACAATGATAGGAAGAGCTCACATCGAAGAATCAAAAAGAAACCTCGCTATGAA 60 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 | ||||||||||||||||||||||||| ||||||||| |||||| |||||||||| | || Sbjct 61 CACTTGGCTGCCACAAGCCAGTTATCCGTGTGGTAACCTTTCTGACACCTCTAGCTTTAA 120 Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||||| | |||||||||||||||||||| |||||| || | ||||||| Sbjct 121 ACTTCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGGGTCGTATTCA 171 >seq44269 Length=487 Score = 205 bits (226), Expect = 2e-50 Identities = 148/171 (87%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 ||||||| |||||||||||||| |||||||| ||||||||| ||| |||||||||| Sbjct 1 CTGCTTCACAATGATAGGAAGAGCTCGCATCGAAGAATCAAAAAGAAACCTCGCTATGAA 60 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| | || Sbjct 61 CGCTTGGCTGCCACAAGCCAGTTATCCGTGTGGTAACCTTTCTGACACCTCTAGATTTAA 120 Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||||| | |||||||||||||||||||| |||||| || | ||||||| Sbjct 121 ACTTCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGGGTCGTATTCA 171 >seq612638 Length=235 Score = 120 bits (132), Expect = 5e-25 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263 |||||||||||||||||||||||| |||||||||| ||||| | ||| | ||||||||| Sbjct 235 GTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGAT 176 Query 264 CGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||||| |||||| |||| ||||||| Sbjct 175 CGATAGGCCACGCTTTCACGGTTCGTATTCA 145 >seq703239 Length=235 Score = 113 bits (124), Expect = 8e-23 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263 |||||||||||||||||||||||| |||||||||| ||||| | | | ||||||||| Sbjct 235 GTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCNNAAGATCTAAAGGAT 176 Query 264 CGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||||||| |||||| |||| ||||||| Sbjct 175 CGATAGGCCACGCTTTCACGGTTCGTATTCA 145 >seq1972383 Length=210 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 || |||||||||||||||||| |||| ||||||| | |||||||||||| ||||| ||| Sbjct 77 ACTGTCATCAGTAGGGTAAAAATAACATGTCTCACAATGGTCTAAACCCAACTCACATTC 18 Query 87 CCTATTAGTGGGTGAAC 103 |||||| |||||||||| Sbjct 17 CCTATTGGTGGGTGAAC 1 >seq2058816 Length=374 Score = 82.4 bits (90), Expect = 1e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 || ||||||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||| Sbjct 17 ACTGTCATCAATAGGGTAAATCTAACCTGCCTCACGACGGTCTAAACCCAACTCACGTTC 76 >seq94791 Length=2561 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || |||| |||| ||||| ||||| Sbjct 905 CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACC 846 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | | ||| | | | |||||||||||||||| | |||| Sbjct 845 CTTGGAACCACCTACAGCTCC---AGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTT 789 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | || || ||||| | |||| ||||||||| ||||||||| Sbjct 788 CCCGTCGATGTGGACTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTT 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 840336798492