Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq94791 167 4e-39 seq125923 107 4e-21 seq62939 87.8 3e-15 seq372003 86.0 1e-14 seq843204 75.2 2e-11 >seq94791 Length=2561 Score = 167 bits (184), Expect = 4e-39 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 524 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 583 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 584 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 640 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| | Sbjct 641 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 700 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 701 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 752 >seq125923 Length=12089 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 11950 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 11891 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | ||| | || || | || || | ||| Sbjct 11890 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 11836 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 11835 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 11776 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 11775 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 11725 >seq62939 Length=2956 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAA--GTCTAGCAGGGACGAAAG 268 ||| |||||||| |||| | |||| ||| | || |||| ||| ||||| || ||||| Sbjct 1003 AGTACAAAGGCAGGAGGGAGCTTGATTGCAAGAC--TCAACCGTCCAGCAGAGATGAAAG 1060 Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 ||| |||| ||||| | || ||| || |||| ||| ||||| ||||||||||| || Sbjct 1061 TCGTCCTTAGTGATCTGACGATGCCGAGAGGAAGGGCAATCGCTTAACGGATAAAAGTTA 1120 Query 329 CCCTGGGGATA 339 | || |||||| Sbjct 1121 CTCTAGGGATA 1131 >seq372003 Length=628 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 ||||| |||||| ||||| ||| ||||||| ||||| | ||||| ||||||||||| Sbjct 15 AGCAGAGACGAATGTCGGCCTTGCTGATCCGACGGTGACTAGTGGAATGGCCGTCGCTCA 74 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| ||| || |||||| Sbjct 75 ACGGATAAAAGTTACTCTAGGGATA 99 >seq843204 Length=2306 Score = 75.2 bits (82), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 224 AAGGGTGTTTGACTGCGACACCCTCAA--GTCTAGCAGGGACGAAAGTCGGGCTTAATGA 281 ||||| | |||||||| | | |||| ||| ||||| ||| |||||||| |||| ||| Sbjct 3 AAGGGAGCTTGACTGCAAGAT--TCAACCGTCGAGCAGAGACTAAAGTCGGTCTTAGTGA 60 Query 282 TCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 ||| ||| | || ||||| |||| |||||| ||||||||||| Sbjct 61 -CCGACGGGGACGAGTGGAAGGGCCATCGCTCAACGGATAAAAG 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 961986700576