Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq94791 167 4e-39
seq125923 107 4e-21
seq62939 87.8 3e-15
seq372003 86.0 1e-14
seq843204 75.2 2e-11
>seq94791
Length=2561
Score = 167 bits (184), Expect = 4e-39
Identities = 177/232 (76%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 524 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 583
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227
| ||||| | |||| | || ||| ||| | | |||||||||||| ||||
Sbjct 584 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 640
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| |
Sbjct 641 GAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGAC 700
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 701 GGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 752
>seq125923
Length=12089
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 11950 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 11891
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| || | ||| | || || | || || | |||
Sbjct 11890 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 11836
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 11835 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 11776
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 11775 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 11725
>seq62939
Length=2956
Score = 87.8 bits (96), Expect = 3e-15
Identities = 99/131 (76%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAA--GTCTAGCAGGGACGAAAG 268
||| |||||||| |||| | |||| ||| | || |||| ||| ||||| || |||||
Sbjct 1003 AGTACAAAGGCAGGAGGGAGCTTGATTGCAAGAC--TCAACCGTCCAGCAGAGATGAAAG 1060
Query 269 TCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328
||| |||| ||||| | || ||| || |||| ||| ||||| ||||||||||| ||
Sbjct 1061 TCGTCCTTAGTGATCTGACGATGCCGAGAGGAAGGGCAATCGCTTAACGGATAAAAGTTA 1120
Query 329 CCCTGGGGATA 339
| || ||||||
Sbjct 1121 CTCTAGGGATA 1131
>seq372003
Length=628
Score = 86.0 bits (94), Expect = 1e-14
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314
||||| |||||| ||||| ||| ||||||| ||||| | ||||| |||||||||||
Sbjct 15 AGCAGAGACGAATGTCGGCCTTGCTGATCCGACGGTGACTAGTGGAATGGCCGTCGCTCA 74
Query 315 ACGGATAAAAGCTACCCTGGGGATA 339
||||||||||| ||| || ||||||
Sbjct 75 ACGGATAAAAGTTACTCTAGGGATA 99
>seq843204
Length=2306
Score = 75.2 bits (82), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 5/104 (5%)
Strand=Plus/Plus
Query 224 AAGGGTGTTTGACTGCGACACCCTCAA--GTCTAGCAGGGACGAAAGTCGGGCTTAATGA 281
||||| | |||||||| | | |||| ||| ||||| ||| |||||||| |||| |||
Sbjct 3 AAGGGAGCTTGACTGCAAGAT--TCAACCGTCGAGCAGAGACTAAAGTCGGTCTTAGTGA 60
Query 282 TCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
||| ||| | || ||||| |||| |||||| |||||||||||
Sbjct 61 -CCGACGGGGACGAGTGGAAGGGCCATCGCTCAACGGATAAAAG 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 961986700576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |