Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq94791 107 2e-21 seq2077329 105 7e-21 seq783663 98.7 1e-18 seq1305962 96.9 4e-18 seq1010552 96.9 4e-18 seq515956 96.9 4e-18 seq938000 89.7 6e-16 seq70269 89.7 6e-16 seq287375 87.8 2e-15 seq213422 87.8 2e-15 seq1966529 86.0 7e-15 seq948214 84.2 2e-14 seq197630 84.2 2e-14 seq71432 82.4 8e-14 seq46039 82.4 8e-14 seq1980773 80.6 3e-13 seq1213016 77.0 3e-12 seq857659 75.2 1e-11 seq171023 75.2 1e-11 seq59905 75.2 1e-11 >seq94791 Length=2561 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 365 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 306 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 305 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 247 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 246 ACAAGGAATTTCGCTACCTTAGGACCGTTA 217 >seq2077329 Length=215 Score = 105 bits (116), Expect = 7e-21 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| ||| || |||| || ||||||| ||||| | | ||||||| || Sbjct 55 GGGGTCTTTGTGTCGAGCTGCAGGTAGTCCGCATCTTAACCGACATGTCTATTTCACCGA 114 Query 84 GCTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | ||||||| ||| || ||||||| ||||||||||||||| Sbjct 115 GC-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCC 173 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 174 GACAAGGAATTTCGCTACCTTAGGACCGTTA 204 >seq783663 Length=290 Score = 98.7 bits (108), Expect = 1e-18 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 48 TAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNNNN 106 || || |||||||||| || | | ||||||| |||| | | | ||||||| Sbjct 154 TAGTCCGCATCTTCACAGACATGTCCATTTCACCGAGC-CTCTCTCCGAGACAGTGCCCA 212 Query 107 NNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 213 GATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 272 Query 167 ACCGTTA 173 ||||||| Sbjct 273 ACCGTTA 279 >seq1305962 Length=295 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 203 Query 173 A 173 | Sbjct 202 A 202 >seq1010552 Length=260 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 222 Query 173 A 173 | Sbjct 223 A 223 >seq515956 Length=203 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 52 Query 173 A 173 | Sbjct 51 A 51 >seq938000 Length=616 Score = 89.7 bits (98), Expect = 6e-16 Identities = 108/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || ||||||||| || | | ||||||||| Sbjct 209 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCATGGAGAATTCAATTTCACCC 268 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | |||| || |||||||||| ||||||||| ||||| | Sbjct 269 GGTCCATGTCGGAGATAGCGGGGCAATCATTACACCATTCATGCAGGTCGTTACTTATGC 328 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 329 GACAAGGAATTTCGCTACCTTAGGACAGTTA 359 >seq70269 Length=8252 Score = 89.7 bits (98), Expect = 6e-16 Identities = 108/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| | ||| || |||| || |||||||||| || | | |||||| || | Sbjct 3769 CGGGGTCTTACCATCCAGACGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTTACCG 3828 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| ||||||||| |||||||||| ||||| | Sbjct 3829 GGTCCATGTCAGAGACAGCGGGGCAATTGTTACACCATTAGTGCAGGTCGCTACTTATGC 3888 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||| ||||||| ||||||||||||| |||| Sbjct 3889 GACACGGAATTTTGCTACCTTAGGACAGTTA 3919 >seq287375 Length=2196 Score = 87.8 bits (96), Expect = 2e-15 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 124 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNN 183 ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGC 60 Query 184 NNNNGTTTACTGGGGCTTC 202 ||||||||||||||| Sbjct 61 CGCCGTTTACTGGGGCTTC 79 >seq213422 Length=628 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| Sbjct 560 TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTT 619 Query 173 A 173 | Sbjct 620 A 620 >seq1966529 Length=251 Score = 86.0 bits (94), Expect = 7e-15 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 124 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 100 TGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 51 >seq948214 Length=3498 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||| | || |||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 1372 TACATCTTTTGTGCAGGTCGAAACTTACTTGACAAGGAATTTCGCTACCTTAGGACCGTT 1431 Query 173 A 173 | Sbjct 1432 A 1432 >seq197630 Length=3156 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || || |||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3048 TACGCCTTTTGTGCGGGTCGGAACTTACGTGACAAGGAATTTCGCTACCTTAGGACCGTT 3107 Query 173 A 173 | Sbjct 3108 A 3108 >seq71432 Length=2975 Score = 82.4 bits (90), Expect = 8e-14 Identities = 87/119 (73%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 55 CATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNNNNNNTA 114 ||||||||| || | | | ||||||| | | || | ||||||| || Sbjct 1621 CATCTTCACGGAGAATTCGATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGCCGTTA 1680 Query 115 CACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||| |||||||||| ||||| |||||||||||||||| |||||||||| |||| Sbjct 1681 CACCATTTGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCCACCTTAGGACAGTTA 1739 >seq46039 Length=230 Score = 82.4 bits (90), Expect = 8e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 114 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || || ||||||| ||||| ||||||||| |||||||||||||||||||||| ||||||| Sbjct 164 ACGCCTTTCGTGCGGGTCGAAACTTACCCAACAAGGAATTTCGCTACCTTAGAACCGTTA 223 >seq1980773 Length=3085 Score = 80.6 bits (88), Expect = 3e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||||||||||||| |||||| ||||||||||||||||||||| |||| Sbjct 120 TTGGTGCAGGTCGGAACTTATCCGACAGGGAATTTCGCTACCTTAGGACTGTTA 67 >seq1213016 Length=417 Score = 77.0 bits (84), Expect = 3e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||| Sbjct 29 CCTTTCGTGCGGGTCGGAGCTTACCCAACAAGGAATTTCGCTACCTTAGGTCAGTTA 85 >seq857659 Length=3656 Score = 75.2 bits (82), Expect = 1e-11 Identities = 96/134 (72%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | |||||| |||| Sbjct 1708 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCATTGAG 1767 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | |||| || ||| || ||||||| |||||||||||||||| Sbjct 1768 C-CTCTCTCCGAGAAAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 1826 Query 144 ACAAGGAATTTCGC 157 |||||||||||||| Sbjct 1827 ACAAGGAATTTCGC 1840 >seq171023 Length=8004 Score = 75.2 bits (82), Expect = 1e-11 Identities = 91/128 (71%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | |||||||| | | || | ||||||| Sbjct 1186 GGTACTCCGCATCTTCACGGAGGATTCAATTTCATCGGGTCCATGTCGGAGACAGCGGGG 1127 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||| |||||||| |||| ||||| ||||||||||||||||||| ||| Sbjct 1126 CAGTCGTTACACCGTTCGTGCAAGTCGCTACTTATGTGACAAGGAATTTCGCTACCCTAG 1067 Query 166 GACCGTTA 173 ||| |||| Sbjct 1066 GACAGTTA 1059 >seq59905 Length=8712 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||| |||||||||||| |||| |||| ||||||||||||||||| Sbjct 3006 TACGCCTTTCGTGCGGGTTAGAACTTACCCGATAAGGTATTTTGCTACCTTAGGACCGTT 3065 Query 173 A 173 | Sbjct 3066 A 3066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536185046799