Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001151.1 Length=269 Score E Sequences producing significant alignments: (Bits) Value seq51278 224 1e-56 >seq51278 Length=220 Score = 224 bits (248), Expect = 1e-56 Identities = 188/226 (83%), Gaps = 17/226 (8%) Strand=Plus/Plus Query 39 CGGCCCCTTCGCCCTTCGGGCAGTTCGGGCCAACAGATCGTTCGGCCTTCGGCGGAATCG 98 ||| ||||| |||| |||||||| |||||| ||||||||| |||||| |||||||||| Sbjct 1 CGGTCCCTTG--CCTTTGGGCAGTT-GGGCCAGCAGATCGTT-GGCCTT-GGCGGAATCG 55 Query 99 GTCATAGGGCATCTCCTGTGT-----------CTTACTGATCGCTCATGCCCAGCAGGCC 147 ||||| |||| ||||| | | |||||||||| ||||||||||||||||| Sbjct 56 GTCATGGGGC-TCTCCCTTTTTACGTGCTGGGCTTACTGATCACTCATGCCCAGCAGGCC 114 Query 148 ACGGGCGTATTTGGCCAGGGGGCGGGCGATCAGGTCTTCTGGCTTGTTGTCGTGGAACGT 207 |||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 115 CCGGGCGTACTGCGCCAGCGGGCGGGCAATCAGATCTTCAGGCTTGTTGTCGTGAAACGT 174 Query 208 CAGTAAACCGCCACGGCTGCGAATACGCACAGTATCAATCAAATAC 253 ||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 175 CAGTAAACCGCCACGACTGCGAATACGTGCAGTATCAATCAAATAC 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746269246422