Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq59074 206 6e-51 seq49923 181 2e-43 seq77026 134 3e-29 seq966087 104 5e-20 seq67162 102 2e-19 seq64942 93.3 9e-17 seq60202 84.2 5e-14 seq59300 75.2 2e-11 >seq59074 Length=14123 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 111 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 168 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 169 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 228 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 229 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 288 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 289 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 328 >seq49923 Length=273 Score = 181 bits (200), Expect = 2e-43 Identities = 140/164 (85%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 205 TCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTAT 264 |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1 TCATCTATTAGCGCAAGGTCCGAAGATCCCCTGCTTTCTCCCGTAGGACGTATGCGGTAT 60 Query 265 TAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACC 324 |||| ||| |||| || ||| |||||||||| || |||||||||| | |||||||||| Sbjct 61 TAGCATCCCTTTCGAAATGTTGTCCCCCACTAATAGCCAGATTCCTAAGTATTACTCACC 120 Query 325 CGTCCGCCGCTCTCAAGAGAAGCAAGCT-TCTCTCTACCGCTCG 367 ||||||||||| | || |||||||| |||||| ||||||| Sbjct 121 CGTCCGCCGCTAAGATCAGTAGCAAGCTACCTCTCT-CCGCTCG 163 >seq77026 Length=2228 Score = 134 bits (148), Expect = 3e-29 Identities = 154/202 (76%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| |||||| || |||| |||||| |||||||||| |||||| || |||||| Sbjct 589 CCTTCTT-CACACATGCAATATTGT-TGGATCGGGCTTTCGCCTATTGTCTAAGATTCCC 532 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 | ||||| || || || | ||| | |||||||||||| |||||||| ||||||||| Sbjct 531 CGCTGCT-CCACCTGTGTGGGTCCAGGCCGTGTCTCAGTCCCAGTGTGGTTGATCATCCG 473 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 |||||| || | ||| | | |||||| || | |||||| |||||||| | ||| | Sbjct 472 AAAAGACCATGTAAGCATCATTGGCTTGGTCAGACTTTACCTAACCAACTA-CCAATACT 414 Query 197 ACCTAGGCTCATCTGATAGCGC 218 || ||||||||| | ||||| Sbjct 413 ACGCAGGCTCATCAAACAGCGC 392 >seq966087 Length=2119 Score = 104 bits (114), Expect = 5e-20 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107 ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 72 CAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 13 Query 108 GTCTCAGTTCCA 119 |||||||| ||| Sbjct 12 GTCTCAGTCCCA 1 >seq67162 Length=11945 Score = 102 bits (112), Expect = 2e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 |||||||||||| | |||||||||||| |||||||||||| |||||||| |||||||||| Sbjct 1858 CCACTGCTGCCTTCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 1917 Query 136 TCTCAGACCAG 146 |||| |||||| Sbjct 1918 TCTCGGACCAG 1928 >seq64942 Length=17110 Score = 93.3 bits (102), Expect = 9e-17 Identities = 86/108 (80%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC 150 |||||||||||| ||| ||||| ||||| || ||||||||||||| ||||| || Sbjct 10391 GTAGGAGTCTGGGTCGTCTCTCATCCCCAGTATGGATGATCATCCTCTC-GACCAAGCAC 10333 Query 151 GGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| | | ||||| ||| ||||||||||||||||||||||| ||| Sbjct 10332 TTATCATTGGATTGGTAAGCTATTACCTCACCAACTAGCTAATCAGAC 10285 >seq60202 Length=10934 Score = 84.2 bits (92), Expect = 5e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 |||||||||| | | | |||||||||| ||| |||||| | ||| |||| |||||||| Sbjct 8038 CCCCACTGCTAATTTCTGCAGGAGTCTGGGCCGGGTCTCATTCCCATTGTGGCTGATCAT 8097 Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCT 162 |||||| |||||| ||| |||| || ||| Sbjct 8098 CCTCTCGGACCAGCTACTGATCATCACCT 8126 >seq59300 Length=16558 Score = 75.2 bits (82), Expect = 2e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107 || |||||| || | || || |||| ||| | ||| ||||| |||||| | |||||| Sbjct 1194 CAAGCTTTCACCTAGTGCGAAAAATTCTCCATTACTGTCTCCCTTAGGAGCTTAGACCGT 1253 Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCT 138 |||||| | | |||||| ||||||||||||| Sbjct 1254 GTCTCATTCCAAGTGTGGCTGATCATCCTCT 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1049724901280