Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq59074 206 6e-51
seq49923 181 2e-43
seq77026 134 3e-29
seq966087 104 5e-20
seq67162 102 2e-19
seq64942 93.3 9e-17
seq60202 84.2 5e-14
seq59300 75.2 2e-11
>seq59074
Length=14123
Score = 206 bits (228), Expect = 6e-51
Identities = 180/220 (82%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 111 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 168
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 169 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 228
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 229 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 288
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 289 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 328
>seq49923
Length=273
Score = 181 bits (200), Expect = 2e-43
Identities = 140/164 (85%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 205 TCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTAT 264
|||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCATCTATTAGCGCAAGGTCCGAAGATCCCCTGCTTTCTCCCGTAGGACGTATGCGGTAT 60
Query 265 TAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACC 324
|||| ||| |||| || ||| |||||||||| || |||||||||| | ||||||||||
Sbjct 61 TAGCATCCCTTTCGAAATGTTGTCCCCCACTAATAGCCAGATTCCTAAGTATTACTCACC 120
Query 325 CGTCCGCCGCTCTCAAGAGAAGCAAGCT-TCTCTCTACCGCTCG 367
||||||||||| | || |||||||| |||||| |||||||
Sbjct 121 CGTCCGCCGCTAAGATCAGTAGCAAGCTACCTCTCT-CCGCTCG 163
>seq77026
Length=2228
Score = 134 bits (148), Expect = 3e-29
Identities = 154/202 (76%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76
||||||| |||||| || |||| |||||| |||||||||| |||||| || ||||||
Sbjct 589 CCTTCTT-CACACATGCAATATTGT-TGGATCGGGCTTTCGCCTATTGTCTAAGATTCCC 532
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136
| ||||| || || || | ||| | |||||||||||| |||||||| |||||||||
Sbjct 531 CGCTGCT-CCACCTGTGTGGGTCCAGGCCGTGTCTCAGTCCCAGTGTGGTTGATCATCCG 473
Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196
|||||| || | ||| | | |||||| || | |||||| |||||||| | ||| |
Sbjct 472 AAAAGACCATGTAAGCATCATTGGCTTGGTCAGACTTTACCTAACCAACTA-CCAATACT 414
Query 197 ACCTAGGCTCATCTGATAGCGC 218
|| ||||||||| | |||||
Sbjct 413 ACGCAGGCTCATCAAACAGCGC 392
>seq966087
Length=2119
Score = 104 bits (114), Expect = 5e-20
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 72 CAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 13
Query 108 GTCTCAGTTCCA 119
|||||||| |||
Sbjct 12 GTCTCAGTCCCA 1
>seq67162
Length=11945
Score = 102 bits (112), Expect = 2e-19
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135
|||||||||||| | |||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1858 CCACTGCTGCCTTCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 1917
Query 136 TCTCAGACCAG 146
|||| ||||||
Sbjct 1918 TCTCGGACCAG 1928
>seq64942
Length=17110
Score = 93.3 bits (102), Expect = 9e-17
Identities = 86/108 (80%), Gaps = 1/108 (1%)
Strand=Plus/Minus
Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTAC 150
|||||||||||| ||| ||||| ||||| || ||||||||||||| ||||| ||
Sbjct 10391 GTAGGAGTCTGGGTCGTCTCTCATCCCCAGTATGGATGATCATCCTCTC-GACCAAGCAC 10333
Query 151 GGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
||| | | ||||| ||| ||||||||||||||||||||||| |||
Sbjct 10332 TTATCATTGGATTGGTAAGCTATTACCTCACCAACTAGCTAATCAGAC 10285
>seq60202
Length=10934
Score = 84.2 bits (92), Expect = 5e-14
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133
|||||||||| | | | |||||||||| ||| |||||| | ||| |||| ||||||||
Sbjct 8038 CCCCACTGCTAATTTCTGCAGGAGTCTGGGCCGGGTCTCATTCCCATTGTGGCTGATCAT 8097
Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCT 162
|||||| |||||| ||| |||| || |||
Sbjct 8098 CCTCTCGGACCAGCTACTGATCATCACCT 8126
>seq59300
Length=16558
Score = 75.2 bits (82), Expect = 2e-11
Identities = 71/91 (78%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 48 CAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 107
|| |||||| || | || || |||| ||| | ||| ||||| |||||| | ||||||
Sbjct 1194 CAAGCTTTCACCTAGTGCGAAAAATTCTCCATTACTGTCTCCCTTAGGAGCTTAGACCGT 1253
Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCT 138
|||||| | | |||||| |||||||||||||
Sbjct 1254 GTCTCATTCCAAGTGTGGCTGATCATCCTCT 1284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1049724901280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |