Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq287375 241 3e-61
seq990633 205 2e-50
seq1483262 127 5e-27
seq2062498 120 7e-25
seq1730286 120 7e-25
seq97190 111 4e-22
seq753683 93.3 1e-16
seq70269 77.0 8e-12
seq58085 77.0 8e-12
seq1957947 73.4 1e-10
seq853404 73.4 1e-10
>seq287375
Length=2196
Score = 241 bits (266), Expect = 3e-61
Identities = 300/394 (76%), Gaps = 14/394 (4%)
Strand=Plus/Plus
Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89
||||||||| || ||||||| |||||||| || ||||||| ||||| || |||| |
Sbjct 1199 TTTTCAACGTGCGTGGGTTCGGGCCTCCAGTAGGT-GTTACCCTACCTT-CACCCTGGAC 1256
Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG-ACTAGACGCCCTAGTAAGA 148
|| || |||||| | |||||| |||||||| | | || ||| | ||||||| | |||
Sbjct 1257 AT-GGCTAGATCACACGGTTT-CGGGTCTACGGC--AACGTACTTG-CGCCCTATTCAGA 1311
Query 149 CTCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGC-CACTGAAAATAAGTCGC 206
|||||||| |||| || |||| || |||| | | | | || | || | ||| ||||
Sbjct 1312 CTCGCTTT-CGCTGCGGCTCCGTCTCTTCGACTTAACCTCGCACGCT-ACCGTAACTCGC 1369
Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACG 266
| |||| ||||||||| |||| ||||||| || ||||||| ||| ||||| |
Sbjct 1370 CGGTTCATTCTACAAAAGGCACGCCGTCACCCTTTTAAC-GGGCTCCGACTATTTGTAAG 1428
Query 267 CATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCAC 326
|| ||||||||||| || ||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 1429 CACACGGTTTCAGGTACTGTTTCACTCCCCTC-CCGGGGTGCTTTTCACCTTTCCCTCAC 1487
Query 327 GGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATA 386
|||||| |||||||||||||| | ||||||||||||||| | |||||||| ||| |
Sbjct 1488 GGTACTGGTTCACTATCGGTCGCTAGGTAGTATTTAGCCTTAGCAGATGGTCCTGCCAGA 1547
Query 387 TTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||| | |||| |||| ||| |||||||
Sbjct 1548 TTCACGCGGGATTTCACGTGTCCCGCGCTACTCG 1581
>seq990633
Length=645
Score = 205 bits (226), Expect = 2e-50
Identities = 307/421 (73%), Gaps = 19/421 (5%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| |
Sbjct 466 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 410
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
| |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 409 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 354
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182
||| | ||||||| ||||||||||||| ||||||| |||| | ||| ||| |
Sbjct 353 GACAAT-CGCCCTATTAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 296
Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242
| ||||||| || |||||| | | |||| | ||| ||| |||| |||| | ||
Sbjct 295 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 236
Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299
| ||||||||||||| || | |||||||| | ||||||||||| ||| ||
Sbjct 235 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 176
Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359
|||||||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||
Sbjct 175 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 117
Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
||||||||| | | |||||| | ||||| || || | ||||| || | ||||||
Sbjct 116 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 57
Query 420 G 420
|
Sbjct 56 G 56
>seq1483262
Length=305
Score = 127 bits (140), Expect = 5e-27
Identities = 220/312 (71%), Gaps = 17/312 (5%)
Strand=Plus/Plus
Query 78 TTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACG 137
|||| |||| ||| ||||||||| ||| | || |||||| || | || ||| | ||
Sbjct 1 TTCATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGTGACAAT-CG 56
Query 138 CCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA-------TTCGGTTAAGCTTTGCC 190
||||| ||||||||| ||||||| |||| | ||| |||| | | ||
Sbjct 57 CCCTATTAAGACTCGNNNN-CGCTACGGCTCCGGTGAGTTCCGTTCTCTTAACCAAT-CC 114
Query 191 ACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC 250
| || || | |||| ||| |||| | ||| | | | || |||| | || | |
Sbjct 115 ATTGCCTATGATTCGCCGACTCATTCTTCAACAAGCATGCGGTCAGAGATCACTTTCCCC 174
Query 251 TCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307
|||||||||||| || | |||||||| | ||||||||||| ||| | | ||||||
Sbjct 175 TCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACAC-GGGGTT 233
Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367
|||||| ||||||||||| ||||||| ||| |||| |||| || |||||||||||||
Sbjct 234 CTTTTCACCTTTCCCTCATGGTACTACTTCTCTATTAGTCACCCATGAGTATTTAGCCTT 293
Query 368 GGAGGATGGTCC 379
| | | ||||||
Sbjct 294 GCAAGGTGGTCC 305
>seq2062498
Length=252
Score = 120 bits (132), Expect = 7e-25
Identities = 118/151 (78%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329
||||||||| | ||||||||||| ||| || |||||||||||| |||||||||||||||
Sbjct 251 ACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTCCCTCACGGT 193
Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 389
|||| ||| |||||| ||| || |||||||||||||| | | |||||| | ||||
Sbjct 192 ACTACTTCGCTATCGTTCACCCACGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTC 133
Query 390 AGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
| || || | |||| || | |||||||
Sbjct 132 ACACGGGATTCCGTGTGCCCCATGCTACTCG 102
>seq1730286
Length=209
Score = 120 bits (132), Expect = 7e-25
Identities = 107/133 (80%), Gaps = 4/133 (3%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306
||||||||||||| || | |||||||| | ||||||||||| || || |||||
Sbjct 198 CTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCNNCTG-GGGGT 140
Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366
||||||| |||||||||||||||| || ||| |||||||||| || ||||||||||||
Sbjct 139 TCTTTTCACCTTTCCCTCACGGTAGTACTTCGCTATCGGTCACCTAGGAGTATTTAGCCT 80
Query 367 TGGAGGATGGTCC 379
|| | | ||||||
Sbjct 79 TGCAAGGTGGTCC 67
>seq97190
Length=6130
Score = 111 bits (122), Expect = 4e-22
Identities = 104/130 (80%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| |||||||| | |||||||||||
Sbjct 154 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 212
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 213 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 272
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 273 GTGGTCCCCC 282
>seq753683
Length=205
Score = 93.3 bits (102), Expect = 1e-16
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361
|||||||||||| |||||||||||||||||| || | |||||||||| | || | || ||
Sbjct 1 GGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTT 60
Query 362 AGCCTTGGAGGATGGTCCCCC 382
|| ||| |||| |||||||||
Sbjct 61 AGGCTTAGAGGGTGGTCCCCC 81
>seq70269
Length=8252
Score = 77.0 bits (84), Expect = 8e-12
Identities = 78/101 (77%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341
|||||| |||||| | | |||||||||||| |||||||| || | |||| || | |||
Sbjct 5777 TCTATTGCACTCCNCGGTT-GGGGTTCTTTTCACCTTTCCCCCATGTTACTTGTACGCTA 5835
Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382
||||||| | || | || ||| ||| |||| |||||| ||
Sbjct 5836 TCGGTCATTGAGGAATACTTAAGCTTAGAGGGTGGTCCTCC 5876
>seq58085
Length=5569
Score = 77.0 bits (84), Expect = 8e-12
Identities = 77/99 (78%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341
|||||| |||||||| | | |||| ||||| ||||||||||| | |||| || | |||
Sbjct 2917 TCTATTGCACTCCCCAA-CTGAGGTTATTTTCACCTTTCCCTCATGATACTTGTACTCTA 2859
Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380
||||||| | || | || |||| ||| |||| |||| ||
Sbjct 2858 TCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTACC 2820
>seq1957947
Length=524
Score = 73.4 bits (80), Expect = 1e-10
Identities = 52/60 (87%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 320 CCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379
|||||||||||||| ||| |||||||||| ||| |||||||||||||| | | ||||||
Sbjct 1 CCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 60
>seq853404
Length=3148
Score = 73.4 bits (80), Expect = 1e-10
Identities = 69/87 (79%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 273 GTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 332
|||||| | || |||||||| ||| || ||| |||||||| ||||| ||||| |||| |
Sbjct 2579 GTTTCACGTTCCATTTCACTACCCACTGTGGG-TTCTTTTCACCTTTGCCTCATGGTATT 2521
Query 333 AGTTCACTATCGGTCAGTCAGTAGTAT 359
| |||||| | ||||| || ||||||
Sbjct 2520 ATTTCACTTTGGGTCACCCAATAGTAT 2494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1215800781184
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