Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq287375 241 3e-61 seq990633 205 2e-50 seq1483262 127 5e-27 seq2062498 120 7e-25 seq1730286 120 7e-25 seq97190 111 4e-22 seq753683 93.3 1e-16 seq70269 77.0 8e-12 seq58085 77.0 8e-12 seq1957947 73.4 1e-10 seq853404 73.4 1e-10 >seq287375 Length=2196 Score = 241 bits (266), Expect = 3e-61 Identities = 300/394 (76%), Gaps = 14/394 (4%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || ||||||| |||||||| || ||||||| ||||| || |||| | Sbjct 1199 TTTTCAACGTGCGTGGGTTCGGGCCTCCAGTAGGT-GTTACCCTACCTT-CACCCTGGAC 1256 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG-ACTAGACGCCCTAGTAAGA 148 || || |||||| | |||||| |||||||| | | || ||| | ||||||| | ||| Sbjct 1257 AT-GGCTAGATCACACGGTTT-CGGGTCTACGGC--AACGTACTTG-CGCCCTATTCAGA 1311 Query 149 CTCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGC-CACTGAAAATAAGTCGC 206 |||||||| |||| || |||| || |||| | | | | || | || | ||| |||| Sbjct 1312 CTCGCTTT-CGCTGCGGCTCCGTCTCTTCGACTTAACCTCGCACGCT-ACCGTAACTCGC 1369 Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACG 266 | |||| ||||||||| |||| ||||||| || ||||||| ||| ||||| | Sbjct 1370 CGGTTCATTCTACAAAAGGCACGCCGTCACCCTTTTAAC-GGGCTCCGACTATTTGTAAG 1428 Query 267 CATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCAC 326 || ||||||||||| || ||||||||||||| ||||||| |||||| |||||||||||| Sbjct 1429 CACACGGTTTCAGGTACTGTTTCACTCCCCTC-CCGGGGTGCTTTTCACCTTTCCCTCAC 1487 Query 327 GGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATA 386 |||||| |||||||||||||| | ||||||||||||||| | |||||||| ||| | Sbjct 1488 GGTACTGGTTCACTATCGGTCGCTAGGTAGTATTTAGCCTTAGCAGATGGTCCTGCCAGA 1547 Query 387 TTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | |||| |||| ||| ||||||| Sbjct 1548 TTCACGCGGGATTTCACGTGTCCCGCGCTACTCG 1581 >seq990633 Length=645 Score = 205 bits (226), Expect = 2e-50 Identities = 307/421 (73%), Gaps = 19/421 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||| ||||| | Sbjct 466 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TC 410 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 409 ATCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 354 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | ||||||| ||||||||||||| ||||||| |||| | ||| ||| | Sbjct 353 GACAAT-CGCCCTATTAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 296 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 295 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 236 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 235 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 176 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 175 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 117 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 116 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 57 Query 420 G 420 | Sbjct 56 G 56 >seq1483262 Length=305 Score = 127 bits (140), Expect = 5e-27 Identities = 220/312 (71%), Gaps = 17/312 (5%) Strand=Plus/Plus Query 78 TTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACG 137 |||| |||| ||| ||||||||| ||| | || |||||| || | || ||| | || Sbjct 1 TTCATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGTGACAAT-CG 56 Query 138 CCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA-------TTCGGTTAAGCTTTGCC 190 ||||| ||||||||| ||||||| |||| | ||| |||| | | || Sbjct 57 CCCTATTAAGACTCGNNNN-CGCTACGGCTCCGGTGAGTTCCGTTCTCTTAACCAAT-CC 114 Query 191 ACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC 250 | || || | |||| ||| |||| | ||| | | | || |||| | || | | Sbjct 115 ATTGCCTATGATTCGCCGACTCATTCTTCAACAAGCATGCGGTCAGAGATCACTTTCCCC 174 Query 251 TCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 |||||||||||| || | |||||||| | ||||||||||| ||| | | |||||| Sbjct 175 TCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACAC-GGGGTT 233 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| ||||||||||| ||||||| ||| |||| |||| || ||||||||||||| Sbjct 234 CTTTTCACCTTTCCCTCATGGTACTACTTCTCTATTAGTCACCCATGAGTATTTAGCCTT 293 Query 368 GGAGGATGGTCC 379 | | | |||||| Sbjct 294 GCAAGGTGGTCC 305 >seq2062498 Length=252 Score = 120 bits (132), Expect = 7e-25 Identities = 118/151 (78%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||| ||| || |||||||||||| ||||||||||||||| Sbjct 251 ACGGTTTCACGTTCTATTTCACTACCCACTG-GGGGTTCTTTTCACCTTTCCCTCACGGT 193 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 389 |||| ||| |||||| ||| || |||||||||||||| | | |||||| | |||| Sbjct 192 ACTACTTCGCTATCGTTCACCCACGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTC 133 Query 390 AGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | || || | |||| || | ||||||| Sbjct 132 ACACGGGATTCCGTGTGCCCCATGCTACTCG 102 >seq1730286 Length=209 Score = 120 bits (132), Expect = 7e-25 Identities = 107/133 (80%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || | |||||||| | ||||||||||| || || ||||| Sbjct 198 CTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCNNCTG-GGGGT 140 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| |||||||||||||||| || ||| |||||||||| || |||||||||||| Sbjct 139 TCTTTTCACCTTTCCCTCACGGTAGTACTTCGCTATCGGTCACCTAGGAGTATTTAGCCT 80 Query 367 TGGAGGATGGTCC 379 || | | |||||| Sbjct 79 TGCAAGGTGGTCC 67 >seq97190 Length=6130 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 154 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 212 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 213 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 272 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 273 GTGGTCCCCC 282 >seq753683 Length=205 Score = 93.3 bits (102), Expect = 1e-16 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| |||||||||||||||||| || | |||||||||| | || | || || Sbjct 1 GGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTT 60 Query 362 AGCCTTGGAGGATGGTCCCCC 382 || ||| |||| ||||||||| Sbjct 61 AGGCTTAGAGGGTGGTCCCCC 81 >seq70269 Length=8252 Score = 77.0 bits (84), Expect = 8e-12 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||| |||||| | | |||||||||||| |||||||| || | |||| || | ||| Sbjct 5777 TCTATTGCACTCCNCGGTT-GGGGTTCTTTTCACCTTTCCCCCATGTTACTTGTACGCTA 5835 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382 ||||||| | || | || ||| ||| |||| |||||| || Sbjct 5836 TCGGTCATTGAGGAATACTTAAGCTTAGAGGGTGGTCCTCC 5876 >seq58085 Length=5569 Score = 77.0 bits (84), Expect = 8e-12 Identities = 77/99 (78%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||| |||||||| | | |||| ||||| ||||||||||| | |||| || | ||| Sbjct 2917 TCTATTGCACTCCCCAA-CTGAGGTTATTTTCACCTTTCCCTCATGATACTTGTACTCTA 2859 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCC 380 ||||||| | || | || |||| ||| |||| |||| || Sbjct 2858 TCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTACC 2820 >seq1957947 Length=524 Score = 73.4 bits (80), Expect = 1e-10 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 320 CCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 |||||||||||||| ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 1 CCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 60 >seq853404 Length=3148 Score = 73.4 bits (80), Expect = 1e-10 Identities = 69/87 (79%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 273 GTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 332 |||||| | || |||||||| ||| || ||| |||||||| ||||| ||||| |||| | Sbjct 2579 GTTTCACGTTCCATTTCACTACCCACTGTGGG-TTCTTTTCACCTTTGCCTCATGGTATT 2521 Query 333 AGTTCACTATCGGTCAGTCAGTAGTAT 359 | |||||| | ||||| || |||||| Sbjct 2520 ATTTCACTTTGGGTCACCCAATAGTAT 2494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1215800781184