Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001416.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value seq27437 327 2e-87 seq832770 111 3e-22 >seq27437 Length=310 Score = 327 bits (362), Expect = 2e-87 Identities = 219/243 (90%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 2 GACTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATG 61 |||||||||||| ||| |||||||| | | |||||||||||||||||||||||||||| Sbjct 249 GACTTGAGCTTGGCCGCGACCGGCAAGAGGATCAGGTTGGCACTGGCCACGCCGTAGATG 190 Query 62 GTGGCGACAAACGCCACGGCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCCC 121 || ||||| |||||||||||||||||| | ||||||||||| || ||||||||||||||| Sbjct 189 GTCGCGACGAACGCCACGGCAATGCCGTTACCCAGTTGCGACGGATCGGCGAGGTTGCCC 130 Query 122 ATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCC 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 ATCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCC 70 Query 182 ATGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGGTAGAAATCCAC 241 |||||||| || || ||||| || | ||| |||||| |||||| || |||||||||||| Sbjct 69 ATGCTTTCGAACACCTTGGCCGCTTCGATGTCGCGGGATTCCTGAGT-GTAGAAATCCAC 11 Query 242 TTC 244 ||| Sbjct 10 TTC 8 >seq832770 Length=234 Score = 111 bits (122), Expect = 3e-22 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 261 GCTTCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCTTTGCGCGCGTAGCTGTCGGGC 320 |||||||||||||||||||| |||||||||||||| || ||||||| |||||||| || Sbjct 1 GCTTCCGGCTCGGCGCCGTCGACCAGCAGTTGCAGACCCTTGCGCGAATAGCTGTCAGGT 60 Query 321 TCGGCATCGGCCACGCCTTCG 341 ||||| ||||||||||||||| Sbjct 61 TCGGCGTCGGCCACGCCTTCG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 968253714912