Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq59074 136 8e-30 seq966087 104 5e-20 seq67162 89.7 1e-15 seq54886 84.2 4e-14 seq60202 78.8 2e-12 seq64942 77.0 6e-12 >seq59074 Length=14123 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 151 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 210 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 211 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 270 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 271 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 303 >seq966087 Length=2119 Score = 104 bits (114), Expect = 5e-20 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 14 CAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 73 |||| |||| ||||||| | || || |||||||||||||||||||||||||||||||||| Sbjct 72 CAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 13 Query 74 GTCTCAGTCCCA 85 |||||||||||| Sbjct 12 GTCTCAGTCCCA 1 >seq67162 Length=11945 Score = 89.7 bits (98), Expect = 1e-15 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 42 CCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 |||||||||||| | ||||||||||||||||||||||||||||| |||||| | ||| || Sbjct 1858 CCACTGCTGCCTTCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 1917 Query 102 TCTCAGTCCGGC 113 |||| | || || Sbjct 1918 TCTCGGACCAGC 1929 >seq54886 Length=222 Score = 84.2 bits (92), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 161 GGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGA--ATGATGCCATCCTCTG 218 ||||||||||||||| | ||| |||||||| |||| | | |||| ||| | Sbjct 222 GGCCGCGAGCCCATCCCAGACCGAAAAATCTTTC--CAAACACGACCATGCGATCACGTC 165 Query 219 ACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCT 278 ||| || ||||||||| |||||||| |||| ||| | | ||||||||||| Sbjct 164 TCAT-ATCCGGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTCCAGGGCAGGTTGCT 106 Query 279 CACGTGTTACTCACCCGTCCGCCACT 304 |||||||||||||||||| ||||||| Sbjct 105 CACGTGTTACTCACCCGTTCGCCACT 80 >seq60202 Length=10934 Score = 78.8 bits (86), Expect = 2e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 39 CCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98 ||||||||||| | | | |||||||||||||| |||||| ||||| |||||| | ||| Sbjct 8037 CCCCCACTGCTAATTTCTGCAGGAGTCTGGGCCGGGTCTCATTCCCATTGTGGCTGATCA 8096 Query 99 ACCTCTCAGTCCGGCTACCGATCGTC 124 |||||| | || ||||| |||| || Sbjct 8097 TCCTCTCGGACCAGCTACTGATCATC 8122 >seq64942 Length=17110 Score = 77.0 bits (84), Expect = 6e-12 Identities = 91/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 57 GTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116 ||||||||||||| ||| ||||| |||| | ||| | ||| |||||| | || || Sbjct 10391 GTAGGAGTCTGGGTCGTCTCTCATCCCCAGTATGGATGATCATCCTCTCGACCAAGC-AC 10333 Query 117 CGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCT 176 ||| | || ||||| ||||||| ||||||||||| |||||| | || || ||| || Sbjct 10332 TTATCATTGGATTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGTGATCCCCTCC 10273 Query 177 TT 178 || Sbjct 10272 TT 10271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977654236416