Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq59074 136 8e-30
seq966087 104 5e-20
seq67162 89.7 1e-15
seq54886 84.2 4e-14
seq60202 78.8 2e-12
seq64942 77.0 6e-12
>seq59074
Length=14123
Score = 136 bits (150), Expect = 8e-30
Identities = 122/153 (80%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 151 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 210
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| || || || |||| ||| | ||
Sbjct 211 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 270
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 271 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 303
>seq966087
Length=2119
Score = 104 bits (114), Expect = 5e-20
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 14 CAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 73
|||| |||| ||||||| | || || ||||||||||||||||||||||||||||||||||
Sbjct 72 CAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 13
Query 74 GTCTCAGTCCCA 85
||||||||||||
Sbjct 12 GTCTCAGTCCCA 1
>seq67162
Length=11945
Score = 89.7 bits (98), Expect = 1e-15
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 42 CCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101
|||||||||||| | ||||||||||||||||||||||||||||| |||||| | ||| ||
Sbjct 1858 CCACTGCTGCCTTCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 1917
Query 102 TCTCAGTCCGGC 113
|||| | || ||
Sbjct 1918 TCTCGGACCAGC 1929
>seq54886
Length=222
Score = 84.2 bits (92), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 5/146 (3%)
Strand=Plus/Minus
Query 161 GGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGA--ATGATGCCATCCTCTG 218
||||||||||||||| | ||| |||||||| |||| | | |||| ||| |
Sbjct 222 GGCCGCGAGCCCATCCCAGACCGAAAAATCTTTC--CAAACACGACCATGCGATCACGTC 165
Query 219 ACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCT 278
||| || ||||||||| |||||||| |||| ||| | | |||||||||||
Sbjct 164 TCAT-ATCCGGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTCCAGGGCAGGTTGCT 106
Query 279 CACGTGTTACTCACCCGTCCGCCACT 304
|||||||||||||||||| |||||||
Sbjct 105 CACGTGTTACTCACCCGTTCGCCACT 80
>seq60202
Length=10934
Score = 78.8 bits (86), Expect = 2e-12
Identities = 69/86 (80%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 39 CCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98
||||||||||| | | | |||||||||||||| |||||| ||||| |||||| | |||
Sbjct 8037 CCCCCACTGCTAATTTCTGCAGGAGTCTGGGCCGGGTCTCATTCCCATTGTGGCTGATCA 8096
Query 99 ACCTCTCAGTCCGGCTACCGATCGTC 124
|||||| | || ||||| |||| ||
Sbjct 8097 TCCTCTCGGACCAGCTACTGATCATC 8122
>seq64942
Length=17110
Score = 77.0 bits (84), Expect = 6e-12
Identities = 91/122 (75%), Gaps = 1/122 (1%)
Strand=Plus/Minus
Query 57 GTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTAC 116
||||||||||||| ||| ||||| |||| | ||| | ||| |||||| | || ||
Sbjct 10391 GTAGGAGTCTGGGTCGTCTCTCATCCCCAGTATGGATGATCATCCTCTCGACCAAGC-AC 10333
Query 117 CGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCT 176
||| | || ||||| ||||||| ||||||||||| |||||| | || || ||| ||
Sbjct 10332 TTATCATTGGATTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGTGATCCCCTCC 10273
Query 177 TT 178
||
Sbjct 10272 TT 10271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 977654236416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |