Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001435.1
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
seq1974512 232 2e-58
seq5054 152 2e-34
seq51393 147 8e-33
>seq1974512
Length=252
Score = 232 bits (256), Expect = 2e-58
Identities = 158/178 (89%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60
|||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 74 TCGATGTATGGCGGTGGTTTTGCCACGGTCCCGGCGTATCTGGCCGACCTGTTCGGTACA 133
Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120
|||||||||||||||||||||||||| |||||||| |||||||| || || || || |
Sbjct 134 CAGATGGTCGGTGCGATCCACGGTCGTCTGCTGACTGCCTGGGCCGCTGCCGGTGTGCTC 193
Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCG 178
|| |||||| |||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 194 GGTCCGGTGCTGGTTTACTACCTGCGTGAGTATCAGTTGAGCATCGGCGTGGAACGCG 251
>seq5054
Length=268
Score = 152 bits (168), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 5/227 (2%)
Strand=Plus/Minus
Query 86 GCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTGAACTATCTGC 145
||||||||||||||||||| || || ||| | | |||||| |||| ||||| | |
Sbjct 266 GCCTGCTGACCGCCTGGGCCGCCGCCGGCCTGCTCGGCCCGAATCTGGTCAACTACATCC 207
Query 146 GTGAGTATCAGTTGAGCATCGGCGTTG--AACGCGCTGCGGCCTATGACATCACCTTGTA 203
| || | ||| | | |||||| | || || | | ||||| |||| | | ||||
Sbjct 206 GCGAATCCCAGATCGCCCACGGCGTCGCCAAGGCCCAG--GCCTACGACACCGCGATGTA 149
Query 204 CATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGCAACCTGCTGGTGCGTCCGGTGGC 263
| | || | | ||||||||||||| ||| ||||||| ||||||||||| ||||||||
Sbjct 148 CGCGATGGCCGCCTTGCTGGTGCTGGGCTTCGTCTGCAATCTGCTGGTGCGCCCGGTGGC 89
Query 264 CGACAAGTACTTCATGACCGACGCCGAACTGGCCGCCGAGCAAGCGC 310
||||||||||||||||| ||||||||||||||| | ||| ||||||
Sbjct 88 CGACAAGTACTTCATGAGCGACGCCGAACTGGCGGAAGAG-AAGCGC 43
>seq51393
Length=204
Score = 147 bits (162), Expect = 8e-33
Identities = 157/205 (77%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 76 ATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTG 135
|||||||| || ||||| || || ||| | |||| ||| || ||||||| ||| |||||
Sbjct 204 ATCCACGGCCGGCTGCTCACGGCGTGGTCGACGGCCGGCATCCTGGGCCCCGTGCTGGTG 145
Query 136 AACTATCTGCGTGAGTATCAGTT-GAGCATCGGCGTTGAACGCGCTGCGGCCTATGACAT 194
||||| ||||| || || ||| | | ||| ||||| |||||||| || | || |||||
Sbjct 144 AACTACCTGCGCGAATACCAGATCGCCCAT-GGCGTGGAACGCGCAGCCGTGTACGACAT 86
Query 195 CACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGCAACCTGCTGGTGCG 254
||| || ||||| || ||||||||| | || || ||||||||||||||||| |||||
Sbjct 85 CACGATGATGATCCTGGCCGGCCTGCTGATCCTCGGCTTCATCTGCAACCTGCTAGTGCG 26
Query 255 TCCGGTGGCCGACAAGTACTTCATG 279
|| || || ||| ||||||||
Sbjct 25 CCCTGTCAACGCGAAGCACTTCATG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1739096478240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |