Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001435.1 Length=587 Score E Sequences producing significant alignments: (Bits) Value seq1974512 232 2e-58 seq5054 152 2e-34 seq51393 147 8e-33 >seq1974512 Length=252 Score = 232 bits (256), Expect = 2e-58 Identities = 158/178 (89%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 1 TCGATGTACGGCGGTGGTTTTGCCACGGTTCCGGCTTACCTGGCCGACCTGTTCGGTACG 60 |||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct 74 TCGATGTATGGCGGTGGTTTTGCCACGGTCCCGGCGTATCTGGCCGACCTGTTCGGTACA 133 Query 61 CAGATGGTCGGTGCGATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTG 120 |||||||||||||||||||||||||| |||||||| |||||||| || || || || | Sbjct 134 CAGATGGTCGGTGCGATCCACGGTCGTCTGCTGACTGCCTGGGCCGCTGCCGGTGTGCTC 193 Query 121 GGCCCGGTGTTGGTGAACTATCTGCGTGAGTATCAGTTGAGCATCGGCGTTGAACGCG 178 || |||||| |||| |||| ||||||||||||||||||||||||||||| ||||||| Sbjct 194 GGTCCGGTGCTGGTTTACTACCTGCGTGAGTATCAGTTGAGCATCGGCGTGGAACGCG 251 >seq5054 Length=268 Score = 152 bits (168), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 86 GCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTGAACTATCTGC 145 ||||||||||||||||||| || || ||| | | |||||| |||| ||||| | | Sbjct 266 GCCTGCTGACCGCCTGGGCCGCCGCCGGCCTGCTCGGCCCGAATCTGGTCAACTACATCC 207 Query 146 GTGAGTATCAGTTGAGCATCGGCGTTG--AACGCGCTGCGGCCTATGACATCACCTTGTA 203 | || | ||| | | |||||| | || || | | ||||| |||| | | |||| Sbjct 206 GCGAATCCCAGATCGCCCACGGCGTCGCCAAGGCCCAG--GCCTACGACACCGCGATGTA 149 Query 204 CATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGCAACCTGCTGGTGCGTCCGGTGGC 263 | | || | | ||||||||||||| ||| ||||||| ||||||||||| |||||||| Sbjct 148 CGCGATGGCCGCCTTGCTGGTGCTGGGCTTCGTCTGCAATCTGCTGGTGCGCCCGGTGGC 89 Query 264 CGACAAGTACTTCATGACCGACGCCGAACTGGCCGCCGAGCAAGCGC 310 ||||||||||||||||| ||||||||||||||| | ||| |||||| Sbjct 88 CGACAAGTACTTCATGAGCGACGCCGAACTGGCGGAAGAG-AAGCGC 43 >seq51393 Length=204 Score = 147 bits (162), Expect = 8e-33 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 76 ATCCACGGTCGCCTGCTGACCGCCTGGGCAGCGGCGGGCGTCTTGGGCCCGGTGTTGGTG 135 |||||||| || ||||| || || ||| | |||| ||| || ||||||| ||| ||||| Sbjct 204 ATCCACGGCCGGCTGCTCACGGCGTGGTCGACGGCCGGCATCCTGGGCCCCGTGCTGGTG 145 Query 136 AACTATCTGCGTGAGTATCAGTT-GAGCATCGGCGTTGAACGCGCTGCGGCCTATGACAT 194 ||||| ||||| || || ||| | | ||| ||||| |||||||| || | || ||||| Sbjct 144 AACTACCTGCGCGAATACCAGATCGCCCAT-GGCGTGGAACGCGCAGCCGTGTACGACAT 86 Query 195 CACCTTGTACATCCTCGCTGGCCTGCTGGTGCTGGGGTTCATCTGCAACCTGCTGGTGCG 254 ||| || ||||| || ||||||||| | || || ||||||||||||||||| ||||| Sbjct 85 CACGATGATGATCCTGGCCGGCCTGCTGATCCTCGGCTTCATCTGCAACCTGCTAGTGCG 26 Query 255 TCCGGTGGCCGACAAGTACTTCATG 279 || || || ||| |||||||| Sbjct 25 CCCTGTCAACGCGAAGCACTTCATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1739096478240