Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001449.1
Length=395
Score E
Sequences producing significant alignments: (Bits) Value
seq5001 114 3e-23
>seq5001
Length=289
Score = 114 bits (126), Expect = 3e-23
Identities = 165/232 (71%), Gaps = 3/232 (1%)
Strand=Plus/Minus
Query 167 ATGGAGTCGTTCGTGGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTG 226
||||| ||||||||||| | ||||| |||| || |||||| | || || || ||| |
Sbjct 289 ATGGAATCGTTCGTGGCGGTGATGGCACTGGTGGCGGCCTCGATCATCGATCCGGGCATC 230
Query 227 TACTTCGCCATGAACAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGC-- 284
|||||||| |||||||||||||| || | ||||| |||||| | | | ||||
Sbjct 229 TACTTCGCGATGAACAGCCCGGCGGCGGTGATCGGCGCCGACGCCGCGTCGGCCGCGCAC 170
Query 285 -AAACCGTCAGCAGTTGGGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCAC 343
| | | || || |||||||| |||| |||||||| |||| | || |||
Sbjct 169 TACATCACCAACACCTGGGGCTTCACCATCACGCCTGAACAGCTGACCGCGACTGCGGCG 110
Query 344 AATATCGGTGAAACCACCATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395
||||||||| ||||||||||| ||||| || ||||| || || ||||
Sbjct 109 GCCATCGGTGAACCCACCATCCTGCATCGTGCAGGTGGCGCACCAACACTGG 58
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1137463101984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |