Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001645.1 Length=355 Score E Sequences producing significant alignments: (Bits) Value seq838377 260 3e-67 seq827880 138 2e-30 >seq838377 Length=231 Score = 260 bits (288), Expect = 3e-67 Identities = 192/224 (86%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 102 TTGTTCGGCCTGGCGGACACACCGCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCAC 161 ||||| || ||||| || || || || ||||||||||| || || ||||||||| |||| Sbjct 230 TTGTTTGGTCTGGCCGATACGCCACGGATTGCCGGCGGCCGGCAAGTGGTCAAGCTGCAT 171 Query 162 CTGCTGTCCCCGTCGCGCAGGCCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGC 221 ||||| || || |||| ||||||||||||| || ||||||||||| |||||||||||| Sbjct 170 CTGCTCTCGCCAGCGCGGCGGCCGGTGCAGGTCACGCAGGATCTGGCCAACTTCTGGCGC 111 Query 222 AGTACCTACGCCGAGGTGAAGAAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCG 281 |||||||| ||||||||||||||||||||||||||||| || || |||||||| |||||| Sbjct 110 AGTACCTATGCCGAGGTGAAGAAGGATCTGAAGGGGCGCTACCCCAAGCATTACTGGCCG 51 Query 282 GATGATCCGTTGGTGGCCGAAGCGACGGCGCGGATCAAACCCCG 325 ||||||||| ||||||| ||||| ||||||||| |||||||| Sbjct 50 GATGATCCGCTGGTGGCTGAAGCCACGGCGCGGGCGAAACCCCG 7 >seq827880 Length=308 Score = 138 bits (152), Expect = 2e-30 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 81 CTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGCGCATTGCCGGCGGG 140 ||||||||| ||||||||| ||||||||||||| ||||| |||||||| |||| || Sbjct 4 CTGGCGGTGAAGCTGCAGGAACTGTTCGGCCTGGCCGACACGCCGCGCATCGCCGATGGC 63 Query 141 CGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGGCCGGTGCAGGTGACCCAG 200 ||| | | | | |||||||||| ||||| || | ||| ||||||| |||||| Sbjct 64 CGCGTGCCGCTGACCCTGCACCTGCTCTCCCCCGGTGGCCGCCCGCTGCAGGTCACCCAG 123 Query 201 GATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAGAAGGATCTGAAGGGGCGG 260 || ||| ||||||||| | |||||||| || ||||| ||||| ||||||| || Sbjct 124 GACCTGCGCAACTTCTGGGAAAACACCTACGCGGAAGTGAAAAAGGAAATGAAGGGCCGC 183 Query 261 TATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCC 299 || || ||| ||||||||||| |||| | |||| Sbjct 184 TACCCACGCCATCCGTGGCCGGATGACCCGTGGACGGCC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1012122815264