Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq838333 232 2e-58 seq2072387 149 2e-33 >seq838333 Length=232 Score = 232 bits (256), Expect = 2e-58 Identities = 131/133 (98%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CGATCAGGAACACTTCGCGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 76 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 75 CCACCTGGGTGGACTTGCACGGGACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 16 Query 121 TGTTTTCGTGAAC 133 ||||||||||||| Sbjct 15 TGTTTTCGTGAAC 3 >seq2072387 Length=264 Score = 149 bits (164), Expect = 2e-33 Identities = 87/90 (97%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 366 CCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGGGGAAA 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 CCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGGGAAAG 60 Query 426 GGACCCTAAGCAACGCGTGGGTAAAAAAGT 455 |||||||| ||||||||||||||||||||| Sbjct 61 GGACCCTAGGCAACGCGTGGGTAAAAAAGT 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1325473532064