Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001721.1 Length=387 Score E Sequences producing significant alignments: (Bits) Value seq2008349 214 4e-53 seq53919 136 9e-30 >seq2008349 Length=389 Score = 214 bits (236), Expect = 4e-53 Identities = 184/232 (79%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 1 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGG 60 |||||||||||| || ||||||||||||||| ||| || ||||||||||||||||| || Sbjct 262 CGAAACCGTGCGTTGCGTGGAGGAGGGCGTGCTGACCTCGACGGCGGATGCCAACGTCGG 203 Query 61 TTCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCA 120 ||| |||||||||||||| || |||||||||| ||||| ||| ||||||| |||||||| Sbjct 202 TTCCATCTTCGGCATCGGTTTCGCCGCGTGGACCGGCGGTGCGCTGCAGTTCATCAACCA 143 Query 121 GTACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCG 180 ||| || ||| | ||||||||||||||||| | || ||||| ||||| || || ||||| Sbjct 142 GTATGGCCTGGAGGACTTCATCGCCCGCGCGCAGTATCTGGCCGAGCAATACGGCGAGCG 83 Query 181 CTTCTCGCCGCNNNNNNNNNNNNTGGAGAAAGCCGCGCAGGGTGAAGTGTTC 232 || | |||| |||| ||||| ||| | |||||| ||||| Sbjct 82 TTTTACCCCGCCAGCGCTGCTGCTGGACAAAGCGGCGAAAGGTGAAATGTTC 31 >seq53919 Length=231 Score = 136 bits (150), Expect = 9e-30 Identities = 107/127 (84%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 259 GCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCATCGCCGT 318 |||||| ||| | || ||||| ||||||||||||||||| || |||||||||| | || Sbjct 209 GCTTGCCTTGGCCGGGTGTTTCAGGGCAGGCTCTGGGGTGTTCATTATTCCCATCAC-GT 151 Query 319 GTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTGCGCCCCG 378 |||||||||||||||||||||| ||| ||||||| || |||||||| || ||||| |||| Sbjct 150 GTCAGGTATTTTTTATGTCGCTGCGCATCTGCATTCTCGAAACCGACATCCTGCGGCCCG 91 Query 379 CTTTGAT 385 ||||| Sbjct 90 AATTGAT 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1112395044640