Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001721.1
Length=387
Score E
Sequences producing significant alignments: (Bits) Value
seq2008349 214 4e-53
seq53919 136 9e-30
>seq2008349
Length=389
Score = 214 bits (236), Expect = 4e-53
Identities = 184/232 (79%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 1 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGG 60
|||||||||||| || ||||||||||||||| ||| || ||||||||||||||||| ||
Sbjct 262 CGAAACCGTGCGTTGCGTGGAGGAGGGCGTGCTGACCTCGACGGCGGATGCCAACGTCGG 203
Query 61 TTCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCA 120
||| |||||||||||||| || |||||||||| ||||| ||| ||||||| ||||||||
Sbjct 202 TTCCATCTTCGGCATCGGTTTCGCCGCGTGGACCGGCGGTGCGCTGCAGTTCATCAACCA 143
Query 121 GTACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCG 180
||| || ||| | ||||||||||||||||| | || ||||| ||||| || || |||||
Sbjct 142 GTATGGCCTGGAGGACTTCATCGCCCGCGCGCAGTATCTGGCCGAGCAATACGGCGAGCG 83
Query 181 CTTCTCGCCGCNNNNNNNNNNNNTGGAGAAAGCCGCGCAGGGTGAAGTGTTC 232
|| | |||| |||| ||||| ||| | |||||| |||||
Sbjct 82 TTTTACCCCGCCAGCGCTGCTGCTGGACAAAGCGGCGAAAGGTGAAATGTTC 31
>seq53919
Length=231
Score = 136 bits (150), Expect = 9e-30
Identities = 107/127 (84%), Gaps = 1/127 (1%)
Strand=Plus/Minus
Query 259 GCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCATCGCCGT 318
|||||| ||| | || ||||| ||||||||||||||||| || |||||||||| | ||
Sbjct 209 GCTTGCCTTGGCCGGGTGTTTCAGGGCAGGCTCTGGGGTGTTCATTATTCCCATCAC-GT 151
Query 319 GTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTGCGCCCCG 378
|||||||||||||||||||||| ||| ||||||| || |||||||| || ||||| ||||
Sbjct 150 GTCAGGTATTTTTTATGTCGCTGCGCATCTGCATTCTCGAAACCGACATCCTGCGGCCCG 91
Query 379 CTTTGAT 385
|||||
Sbjct 90 AATTGAT 84
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1112395044640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |