Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq94780 118 9e-25
seq833527 111 1e-22
seq71546 100 2e-19
seq13446 89.7 4e-16
>seq94780
Length=20738
Score = 118 bits (130), Expect = 9e-25
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 19582 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 19640
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| ||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 19641 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 19700
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 19701 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 19740
>seq833527
Length=266
Score = 111 bits (122), Expect = 1e-22
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 26 TACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCA 85
|||||| |||| || ||||||| || |||| | | || |||| |||| ||||
Sbjct 1 TACGATCGGCTTTTTGAGATTAGCATCCTATCGCTAGGTAGCAACCCTTTGTACCGACCA 60
Query 86 TTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCT 145
||||| ||||||| |||||| | |||||||||||| ||||||||||| ||||| |||
Sbjct 61 TTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGACGTCGTCCCCGCCT 120
Query 146 TCCTCCGGTTTGTCAC 161
|||||| |||||||||
Sbjct 121 TCCTCCAGTTTGTCAC 136
>seq71546
Length=2581
Score = 100 bits (110), Expect = 2e-19
Identities = 122/162 (75%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACA--CTTTCTGGGATTAGCTCCCCCTCGC 59
||||||||||| |||||||| | ||| || ||||| || ||| | ||| ||| |
Sbjct 2385 CGAGTTGCAGAGAACAATCCGAAT--CGAGGCAATCTTTCCGG-ATTCGTTCCACCTTAC 2329
Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119
| || ||| ||| || || |||| ||||||| |||| |||||||||||||
Sbjct 2328 AACCTTGCTTCCCATTGTCAGTGACACTGTAGCACGTGTGTGGCCCAACCCATAAGGGCC 2269
Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||| |||||||||||||| |||||||||||||||| | ||||
Sbjct 2268 ATGTGGACTTGACGTCAT-CCCACCTTCCTCCGGTATCTCAC 2228
>seq13446
Length=4310
Score = 89.7 bits (98), Expect = 4e-16
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||
Sbjct 4006 CCATTGTAGCACGTGTGTGGCCTAGCCCATAAGGGCCATGCAGACTTGACGTCATCCCCA 3947
Query 143 CCTTCCTCCGGTTTGTCAC 161
||||||||| || | ||||
Sbjct 3946 CCTTCCTCCAGTATCTCAC 3928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 407626058970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |