Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq94780 118 9e-25 seq833527 111 1e-22 seq71546 100 2e-19 seq13446 89.7 4e-16 >seq94780 Length=20738 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 19582 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 19640 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 19641 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 19700 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 19701 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 19740 >seq833527 Length=266 Score = 111 bits (122), Expect = 1e-22 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 26 TACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCA 85 |||||| |||| || ||||||| || |||| | | || |||| |||| |||| Sbjct 1 TACGATCGGCTTTTTGAGATTAGCATCCTATCGCTAGGTAGCAACCCTTTGTACCGACCA 60 Query 86 TTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCT 145 ||||| ||||||| |||||| | |||||||||||| ||||||||||| ||||| ||| Sbjct 61 TTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGACGTCGTCCCCGCCT 120 Query 146 TCCTCCGGTTTGTCAC 161 |||||| ||||||||| Sbjct 121 TCCTCCAGTTTGTCAC 136 >seq71546 Length=2581 Score = 100 bits (110), Expect = 2e-19 Identities = 122/162 (75%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACA--CTTTCTGGGATTAGCTCCCCCTCGC 59 ||||||||||| |||||||| | ||| || ||||| || ||| | ||| ||| | Sbjct 2385 CGAGTTGCAGAGAACAATCCGAAT--CGAGGCAATCTTTCCGG-ATTCGTTCCACCTTAC 2329 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 | || ||| ||| || || |||| ||||||| |||| ||||||||||||| Sbjct 2328 AACCTTGCTTCCCATTGTCAGTGACACTGTAGCACGTGTGTGGCCCAACCCATAAGGGCC 2269 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| |||||||||||||| |||||||||||||||| | |||| Sbjct 2268 ATGTGGACTTGACGTCAT-CCCACCTTCCTCCGGTATCTCAC 2228 >seq13446 Length=4310 Score = 89.7 bits (98), Expect = 4e-16 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||| Sbjct 4006 CCATTGTAGCACGTGTGTGGCCTAGCCCATAAGGGCCATGCAGACTTGACGTCATCCCCA 3947 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||| || | |||| Sbjct 3946 CCTTCCTCCAGTATCTCAC 3928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407626058970