Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq795743 127 3e-27 seq817092 118 2e-24 seq94780 116 6e-24 seq832032 113 7e-23 seq1508883 109 9e-22 seq77026 109 9e-22 seq1123124 93.3 7e-17 seq59074 80.6 4e-13 seq1441153 78.8 2e-12 seq60555 77.0 5e-12 >seq795743 Length=230 Score = 127 bits (140), Expect = 3e-27 Identities = 103/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||| ||||||| |||||||||||||||| | |||| ||| |||||||||| ||||| Sbjct 150 CCCACCCTTTCGCTCCTCAGCGTCAGTTACGGCCCAGAGATCTGCCTTCGCCATCGGTGT 91 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||| ||||||||||| |||||||| || || || | |||| Sbjct 90 TCCTCCTGATATCTGCGCATTCCACCGCTACACCAGGAATTCCAATCTCCCCTACCGCAC 31 Query 121 TCAAG 125 || || Sbjct 30 TCTAG 26 >seq817092 Length=212 Score = 118 bits (130), Expect = 2e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | |||||| || |||||| | |||||| ||| Sbjct 10 GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 69 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || ||||||||||||||||||| ||||||| Sbjct 70 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACCGAGTTAGC 129 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||||||| || Sbjct 130 CGATGCTTATTCCTCAGATA 149 >seq94780 Length=20738 Score = 116 bits (128), Expect = 6e-24 Identities = 187/268 (70%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 20476 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 20535 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| ||||||| |||||||| ||||||||| |||||| | ||||| ||| Sbjct 20536 TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 20595 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | ||| | |||||| | Sbjct 20596 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 20650 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 20651 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 20710 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAG 265 ||| |||||||||||||||||||| || Sbjct 20711 CCGTCTTACCGCGGCTGCTGGCACGGAG 20738 >seq832032 Length=212 Score = 113 bits (124), Expect = 7e-23 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 |||||||||| | ||| || | |||||| || |||||| | |||||| ||| Sbjct 203 GGGTTGAGCCTTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 144 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || ||||||||||||||||||| ||||||| Sbjct 143 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACTGAGTTAGC 84 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||||||| || Sbjct 83 CGATGCTTATTCCTCAGATA 64 >seq1508883 Length=202 Score = 109 bits (120), Expect = 9e-22 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 88 CTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGC 147 || ||| |||||||| |||| |||| | |||| || |||||| | ||| | Sbjct 1 CTCCACCGGGAATTCCCTCTGCCCCTCCCGTACTCCAGCTTGGTAGTTTCCACCGCATGT 60 Query 148 TATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACA 207 || ||||||| | ||| || | |||||| || || |||| | |||||| Sbjct 61 CCAGGCCTGAGCCCTGGGATTTTACGACGGACTTGAAAAGCCACCGACACACTCTTTACG 120 Query 208 CCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTT 267 | |||| | |||||||||||||||| ||| || ||||||||||||||||||| |||| Sbjct 121 CACAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTT 180 Query 268 AGCCGTGGCTTATTCCTCAG 287 ||||| ||||||||||||| Sbjct 181 AGCCGATGCTTATTCCTCAG 200 >seq77026 Length=2228 Score = 109 bits (120), Expect = 9e-22 Identities = 202/291 (69%), Gaps = 9/291 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCA-ATCCGCCTTCGCCACTGGTG 59 |||| |||||||| || ||||||| || | | | || | |||||||| ||| | Sbjct 921 CCCATGCTTTCGCACCCCAGCGTCTGT-AGGGACTCACAGAGTTGCCTTCGCTTTTGGCG 863 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||| |||| ||||||| |||||||| ||||| | | |||||| || |||| || Sbjct 862 TTCCTTCGTAAATCTACGGATTTCACCCCTACAGATGAAATTCCACTTTCCTCAATCTCA 803 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCT-ATGGGTTGAGCCCATAGTTTTCACATCTGA 178 |||||| || ||||| | ||| | | || | | | |||||| | | Sbjct 802 CTCAAGTGAATTGGTTTCGAGAGCATTCCGACACTTTTTGACGAC---TTTCACTTTCTA 746 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 | | | |||||||| ||||||||| |||| | | |||| | ||| || || || Sbjct 745 CCCGATTCGCCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTCCCCCCC-- 688 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGT 289 || ||||||| |||||||||||| ||||||||| ||||| ||||||| || Sbjct 687 -GTCTTACCGCTGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCAAGT 638 >seq1123124 Length=2189 Score = 93.3 bits (102), Expect = 7e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 204 TACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGT 263 ||| |||||| | |||||||||||||||| ||| || |||||||||| |||||||| Sbjct 2105 TACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCAGCTGGCACAG 2164 Query 264 AGTTAGCCGTGGCTTATTCCTCAG 287 ||||||||| ||||||||||||| Sbjct 2165 AGTTAGCCGATGCTTATTCCTCAG 2188 >seq59074 Length=14123 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276 |||| | ||| |||||| || ||| |||||||||||||||||||| ||||||||| ||| Sbjct 8 TCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGC 67 Query 277 TTATTCCTC 285 || |||||| Sbjct 68 TTCTTCCTC 76 >seq1441153 Length=262 Score = 78.8 bits (86), Expect = 2e-12 Identities = 91/123 (74%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 |||||||||| | ||| || | |||||| || |||||| |||||| ||| Sbjct 222 GGGTTGAGCCATGGGATTTGACGGCGGACTTGAAAAGCCACCTACAAATGCTTTACGCCC 163 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | || ||||||||||||| ||| || |||||| ||||| |||||| ||||||| Sbjct 162 AATCATTCTGGATAACGCTTGCATCCTCTGTCTTACCGAGGCTGGTGGCACAGAGTTAGC 103 Query 271 CGT 273 ||| Sbjct 102 CGT 100 >seq60555 Length=21557 Score = 77.0 bits (84), Expect = 5e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 147 CTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTAC 206 |||||| |||||||| ||| || | |||||| || |||||| | |||||| Sbjct 1829 CTATGG-TTGAGCCCCGGAATTTGACGGCGGACTTGAAAAGCCACCTACAAACGCTTTAC 1887 Query 207 ACCCAATAAATCCGGATAACGCTTGCCACCTAC-GTATTACCGCGGCTGCTGGCACGTAG 265 ||||||| | | ||||||||||||| || | | || ||| | || ||||| ||| ||| Sbjct 1888 ACCCAATCATTTCGGATAACGCTTG-CATTTCCTGTCTTATTGTGGTTGCTGCCACATAG 1946 Query 266 TTAGCCGTGGCTTATTCCTCAGGTA 290 ||| || | ||||||||||||| || Sbjct 1947 TTAACCAT-GCTTATTCCTCAGATA 1970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 812116532871