Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq795743 127 3e-27
seq817092 118 2e-24
seq94780 116 6e-24
seq832032 113 7e-23
seq1508883 109 9e-22
seq77026 109 9e-22
seq1123124 93.3 7e-17
seq59074 80.6 4e-13
seq1441153 78.8 2e-12
seq60555 77.0 5e-12
>seq795743
Length=230
Score = 127 bits (140), Expect = 3e-27
Identities = 103/125 (82%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||||| ||||||| |||||||||||||||| | |||| ||| |||||||||| |||||
Sbjct 150 CCCACCCTTTCGCTCCTCAGCGTCAGTTACGGCCCAGAGATCTGCCTTCGCCATCGGTGT 91
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| |||||| |||||| ||||||||||| |||||||| || || || | ||||
Sbjct 90 TCCTCCTGATATCTGCGCATTCCACCGCTACACCAGGAATTCCAATCTCCCCTACCGCAC 31
Query 121 TCAAG 125
|| ||
Sbjct 30 TCTAG 26
>seq817092
Length=212
Score = 118 bits (130), Expect = 2e-24
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210
||||||||||| | ||| || | |||||| || |||||| | |||||| |||
Sbjct 10 GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 69
Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270
||| | |||||||||||||||| ||| || ||||||||||||||||||| |||||||
Sbjct 70 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACCGAGTTAGC 129
Query 271 CGTGGCTTATTCCTCAGGTA 290
|| ||||||||||||| ||
Sbjct 130 CGATGCTTATTCCTCAGATA 149
>seq94780
Length=20738
Score = 116 bits (128), Expect = 6e-24
Identities = 187/268 (70%), Gaps = 8/268 (3%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| || ||||||| || |||| | | |||||||| ||| ||
Sbjct 20476 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 20535
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| ||||||| |||||||| ||||||||| |||||| | ||||| |||
Sbjct 20536 TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 20595
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177
||||| || ||||| | ||| || | ||| | |||||| |
Sbjct 20596 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 20650
Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237
|| | | |||||||| ||||||||| |||| | | |||| | ||| |||||| ||
Sbjct 20651 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 20710
Query 238 ACGTATTACCGCGGCTGCTGGCACGTAG 265
||| |||||||||||||||||||| ||
Sbjct 20711 CCGTCTTACCGCGGCTGCTGGCACGGAG 20738
>seq832032
Length=212
Score = 113 bits (124), Expect = 7e-23
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210
|||||||||| | ||| || | |||||| || |||||| | |||||| |||
Sbjct 203 GGGTTGAGCCTTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 144
Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270
||| | |||||||||||||||| ||| || ||||||||||||||||||| |||||||
Sbjct 143 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACTGAGTTAGC 84
Query 271 CGTGGCTTATTCCTCAGGTA 290
|| ||||||||||||| ||
Sbjct 83 CGATGCTTATTCCTCAGATA 64
>seq1508883
Length=202
Score = 109 bits (120), Expect = 9e-22
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 88 CTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGC 147
|| ||| |||||||| |||| |||| | |||| || |||||| | ||| |
Sbjct 1 CTCCACCGGGAATTCCCTCTGCCCCTCCCGTACTCCAGCTTGGTAGTTTCCACCGCATGT 60
Query 148 TATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACA 207
|| ||||||| | ||| || | |||||| || || |||| | ||||||
Sbjct 61 CCAGGCCTGAGCCCTGGGATTTTACGACGGACTTGAAAAGCCACCGACACACTCTTTACG 120
Query 208 CCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTT 267
| |||| | |||||||||||||||| ||| || ||||||||||||||||||| ||||
Sbjct 121 CACAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTT 180
Query 268 AGCCGTGGCTTATTCCTCAG 287
||||| |||||||||||||
Sbjct 181 AGCCGATGCTTATTCCTCAG 200
>seq77026
Length=2228
Score = 109 bits (120), Expect = 9e-22
Identities = 202/291 (69%), Gaps = 9/291 (3%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCA-ATCCGCCTTCGCCACTGGTG 59
|||| |||||||| || ||||||| || | | | || | |||||||| ||| |
Sbjct 921 CCCATGCTTTCGCACCCCAGCGTCTGT-AGGGACTCACAGAGTTGCCTTCGCTTTTGGCG 863
Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119
||||| |||| ||||||| |||||||| ||||| | | |||||| || |||| ||
Sbjct 862 TTCCTTCGTAAATCTACGGATTTCACCCCTACAGATGAAATTCCACTTTCCTCAATCTCA 803
Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCT-ATGGGTTGAGCCCATAGTTTTCACATCTGA 178
|||||| || ||||| | ||| | | || | | | |||||| | |
Sbjct 802 CTCAAGTGAATTGGTTTCGAGAGCATTCCGACACTTTTTGACGAC---TTTCACTTTCTA 746
Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238
| | | |||||||| ||||||||| |||| | | |||| | ||| || || ||
Sbjct 745 CCCGATTCGCCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTCCCCCCC-- 688
Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGT 289
|| ||||||| |||||||||||| ||||||||| ||||| ||||||| ||
Sbjct 687 -GTCTTACCGCTGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCAAGT 638
>seq1123124
Length=2189
Score = 93.3 bits (102), Expect = 7e-17
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 204 TACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGT 263
||| |||||| | |||||||||||||||| ||| || |||||||||| ||||||||
Sbjct 2105 TACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCAGCTGGCACAG 2164
Query 264 AGTTAGCCGTGGCTTATTCCTCAG 287
||||||||| |||||||||||||
Sbjct 2165 AGTTAGCCGATGCTTATTCCTCAG 2188
>seq59074
Length=14123
Score = 80.6 bits (88), Expect = 4e-13
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276
|||| | ||| |||||| || ||| |||||||||||||||||||| ||||||||| |||
Sbjct 8 TCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGC 67
Query 277 TTATTCCTC 285
|| ||||||
Sbjct 68 TTCTTCCTC 76
>seq1441153
Length=262
Score = 78.8 bits (86), Expect = 2e-12
Identities = 91/123 (74%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210
|||||||||| | ||| || | |||||| || |||||| |||||| |||
Sbjct 222 GGGTTGAGCCATGGGATTTGACGGCGGACTTGAAAAGCCACCTACAAATGCTTTACGCCC 163
Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270
||| | || ||||||||||||| ||| || |||||| ||||| |||||| |||||||
Sbjct 162 AATCATTCTGGATAACGCTTGCATCCTCTGTCTTACCGAGGCTGGTGGCACAGAGTTAGC 103
Query 271 CGT 273
|||
Sbjct 102 CGT 100
>seq60555
Length=21557
Score = 77.0 bits (84), Expect = 5e-12
Identities = 107/145 (74%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 147 CTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTAC 206
|||||| |||||||| ||| || | |||||| || |||||| | ||||||
Sbjct 1829 CTATGG-TTGAGCCCCGGAATTTGACGGCGGACTTGAAAAGCCACCTACAAACGCTTTAC 1887
Query 207 ACCCAATAAATCCGGATAACGCTTGCCACCTAC-GTATTACCGCGGCTGCTGGCACGTAG 265
||||||| | | ||||||||||||| || | | || ||| | || ||||| ||| |||
Sbjct 1888 ACCCAATCATTTCGGATAACGCTTG-CATTTCCTGTCTTATTGTGGTTGCTGCCACATAG 1946
Query 266 TTAGCCGTGGCTTATTCCTCAGGTA 290
||| || | ||||||||||||| ||
Sbjct 1947 TTAACCAT-GCTTATTCCTCAGATA 1970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 812116532871
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |