Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq72279 134 1e-29 seq37492 89.7 5e-16 >seq72279 Length=5110 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 231 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 290 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 291 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 348 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 349 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 406 >seq37492 Length=262 Score = 89.7 bits (98), Expect = 5e-16 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| |||| ||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 262 AATGATTAATAGGGATAGTCGGGGGCGTCAGTATTCAGCTGTCAGAGGTGAAATTCTTGG 203 Query 185 ATTT 188 |||| Sbjct 202 ATTT 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501693611040