Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq94791 250 4e-64
seq125923 196 7e-48
seq62939 145 1e-32
seq70269 125 1e-26
seq171023 123 4e-26
seq1780628 109 8e-22
seq35104 105 1e-20
seq628092 104 4e-20
seq1171748 102 1e-19
seq276324 93.3 6e-17
seq288616 91.5 2e-16
seq149597 86.0 1e-14
seq127196 82.4 1e-13
seq990633 77.0 5e-12
seq869389 75.2 2e-11
seq1694878 73.4 6e-11
seq344491 73.4 6e-11
>seq94791
Length=2561
Score = 250 bits (276), Expect = 4e-64
Identities = 220/273 (81%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| |||| |||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 1075 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 1016
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 1015 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 956
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 955 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 896
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || | ||||||||||||||||||||||||||| |||
Sbjct 895 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 836
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| |||| ||||| | || ||||||||||||
Sbjct 835 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 803
>seq125923
Length=12089
Score = 196 bits (216), Expect = 7e-48
Identities = 194/251 (77%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 11424 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 11483
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 11484 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCT 11543
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 11544 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 11603
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| |||| || |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 11604 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 11663
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 11664 AGTCGACATCG 11674
>seq62939
Length=2956
Score = 145 bits (160), Expect = 1e-32
Identities = 199/274 (73%), Gaps = 3/274 (1%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCT-TCCCAGC 62
|| |||||| |||| | | ||| || |||| | |||| |||| ||| ||| |
Sbjct 1445 GGTGGGCTTACTACTTATAAACTTTCGGCAGTTATTCTCTCCACACTTGGCTATCCAATG 1386
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | |||| || ||| | |||| ||||| || |||||||| ||||||
Sbjct 1385 TTTACCGTGGGCACGATAACTCGTACACTAAAGGTCTGTCCTTCACGGTCCTCCCGTACT 1326
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| | |||| | ||| |||||| ||
Sbjct 1325 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCAGATATAAATAGAATTGTCTCACG 1266
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
| |||||||||||||||| | | || | ||| ||| |||||| |||||||||||| |||
Sbjct 1265 ATGTTCTGAACCCAGCTCACATACCACATTATTGGACGAACAACCCAACCCTTGGAACCA 1206
Query 243 ACTTCAGCCCCAGGATGA-GACGAGCCGACATCG 275
|| || | | ||| ||| || ||||||||| ||
Sbjct 1205 CCTACAACTCTAGG-TGATGAAGAGCCGACACCG 1173
>seq70269
Length=8252
Score = 125 bits (138), Expect = 1e-26
Identities = 167/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106
||||||||| || || | | || ||| ||||||||| |||| ||||| ||| |
Sbjct 3192 AACTTAGCTGTCCGGCGCTTCTATTCGCATAACAACTGGTACACCGTAGGTTGAACCAAC 3251
Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGACGGAT 162
|| |||||||||||||| ||| ||||| | || | ||| || || || |||
Sbjct 3252 CCAGTCCTCTCGTACTAGGGATGGCTCCACACAGTTCTCCCTTTAACACCAACAGTAGAT 3311
Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222
||| || ||| |||||| || |||||| || ||| ||| ||| || |||| || | |||
Sbjct 3312 AGGAACTGAAGTGTCTCACGTCGTTCTAAAGCCAACTCACGTACCACTTTCATCAGTGAA 3371
Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274
|| || | ||||| | |||| | ||| |||||||||| || ||| ||| |||
Sbjct 3372 CAACCGAGCCCTTAGAACCTTCCTCAACCCCAGGATGTGATGAGTCGATATC 3423
>seq171023
Length=8004
Score = 123 bits (136), Expect = 4e-26
Identities = 145/196 (74%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATT 143
||| ||||| ||||| | | ||| |||| |||||||| || |||||| || |
Sbjct 1835 GGTACACCATAGGTTGAGCAAACCCATTCCTTTCGTACTAGGGCTGGCTCCTTGCAGTTC 1776
Query 144 TCCT----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199
||| || || | | |||||| || |||||||||| ||||||||| |||||| ||
Sbjct 1775 TCCCTTTAACACCAATGGTAGATAGGAACTGAACTGTCTCACGACGTTCTAAACCCAACT 1716
Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259
| || | ||| || ||||||| || |||||||||||||| ||||| ||||||||||
Sbjct 1715 CATGTACGACTTCCATACGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATG 1656
Query 260 AGACGAGCCGACATCG 275
|| ||| ||||||||
Sbjct 1655 TGATGAGTCGACATCG 1640
>seq1780628
Length=233
Score = 109 bits (120), Expect = 8e-22
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224
|||||||||||| || ||||||||| |||||||||| ||| || | ||||||||||||||
Sbjct 71 GGACCGAACTGTTTCACGACGTTCTAAACCCAGCTCACGTACCACATTAATGGGCGAACA 130
Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||||| |||||| ||| || || | ||||| | ||||||||||||
Sbjct 131 ACCCAAACCTTGGAACCACCTACAACTCCAGGTGGNNNNGAGCCGACATCG 181
>seq35104
Length=221
Score = 105 bits (116), Expect = 1e-20
Identities = 138/188 (73%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 187 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 128
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG-CTCCTCTCAAATTTCCT 147
|||| ||||| ||| ||| ||||||| |||||| |||| | |||||| || | |||
Sbjct 127 ACCATAGGTTGACCCAACCCAGTCCTCTTGTACTA-GGACTGGCTCCTCGCAGTTCTCCC 69
Query 148 ----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCG 203
|| || ||| ||| || ||||||||||||| |||| |||| |||||| ||| ||
Sbjct 68 TTTAACACCAACGGTAGATGGGAACCGAACTGTCTCACGACATTCTAAACCCAACTCACG 9
Query 204 TGCCTCTT 211
| || |||
Sbjct 8 TACCACTT 1
>seq628092
Length=217
Score = 104 bits (114), Expect = 4e-20
Identities = 133/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 183 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 124
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| ||| ||| |||||||| ||||| ||| ||||||| | | |||
Sbjct 123 ACCATAGGTTGACCCAACCCAGTCCTCTCTTACTAGGGATGGCTCCTCATAGTTCTCCCT 64
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| ||||| ||||||||||||| |||||||| |||||| ||| |||
Sbjct 63 TTAACACCAACGGTAAATAGGAACCGAACTGTCTCATGACGTTCTAAACCCAACTCACGT 4
Query 205 GCC 207
||
Sbjct 3 ACC 1
>seq1171748
Length=237
Score = 102 bits (112), Expect = 1e-19
Identities = 89/111 (80%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 117 CGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGT 176
||||||| ||| || ||||||||| | | |||||| || ||| |||||||| |||
Sbjct 1 CGTACTATGGAAAGGTCCTCTCAATGGTATAAAGCCCACACCGAATATGGACCGAATTGT 60
Query 177 CTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227
||| || |||||||||||||||| ||| || | |||||||||||||||||
Sbjct 61 CTCATGATGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCC 111
>seq276324
Length=621
Score = 93.3 bits (102), Expect = 6e-17
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219
|||||| ||||||||||||| ||||||||| |||||| ||| ||| || |||| || |||
Sbjct 36 GATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGC 95
Query 220 GAACAGCCCAACCCTTGGG 238
||||| || ||||||||||
Sbjct 96 GAACAACCGAACCCTTGGG 114
>seq288616
Length=1114
Score = 91.5 bits (100), Expect = 2e-16
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220
||| |||||||||||| || | || |||| |||||||||| ||| || | |||| ||| |
Sbjct 247 ATATGGACCGAACTGTGTCACAACATTCTAAACCCAGCTCACGTACCGCATTAAGGGGTG 306
Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|||| ||||||| |||| ||| || || | ||| | | || ||||| ||||||
Sbjct 307 AACAACCCAACCATTGGAACCACCTACAACTCCACGTGGCGAAGAGCCAACATCG 361
>seq149597
Length=2497
Score = 86.0 bits (94), Expect = 1e-14
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229
|||||||||| |||||||||||||||| ||| || | | |||||||||||||||||||
Sbjct 526 GAACTGTCTCACGACGTTCTGAACCCATCTCACGGATCGCATTAATGGGCGAACAGCCCA 467
Query 230 ACCCTTGGGACCTACTTCAG 249
| |||||| ||| || |||
Sbjct 466 ATCCTTGGAACCACCTACAG 447
>seq127196
Length=4683
Score = 82.4 bits (90), Expect = 1e-13
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTG 205
|||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||||
Sbjct 906 ACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTG 963
>seq990633
Length=645
Score = 77.0 bits (84), Expect = 5e-12
Identities = 56/65 (86%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 211 TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270
||||||||||||||||||||||||||| ||| || |||| ||||| | || |||||||
Sbjct 549 TTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCTCCAGGTGGCGAAGAGCCGA 608
Query 271 CATCG 275
|||||
Sbjct 609 CATCG 613
>seq869389
Length=2904
Score = 75.2 bits (82), Expect = 2e-11
Identities = 61/74 (82%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261
||| || |||| || |||||||| || |||||||||||||| ||||| | | |||||| |
Sbjct 78 CGTACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACTCTAGGATGTG 19
Query 262 ACGAGCCGACATCG 275
| ||| ||||||||
Sbjct 18 ATGAGTCGACATCG 5
>seq1694878
Length=464
Score = 73.4 bits (80), Expect = 6e-11
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 108 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 49
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136
|||| ||||| ||| ||| |||||||||||||| || |||||||
Sbjct 48 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTC 1
>seq344491
Length=446
Score = 73.4 bits (80), Expect = 6e-11
Identities = 81/108 (75%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 339 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 398
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136
|||| ||||| ||| ||| |||||||||||||| || |||||||
Sbjct 399 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTC 446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 765082756836
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