Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq94791 250 4e-64 seq125923 196 7e-48 seq62939 145 1e-32 seq70269 125 1e-26 seq171023 123 4e-26 seq1780628 109 8e-22 seq35104 105 1e-20 seq628092 104 4e-20 seq1171748 102 1e-19 seq276324 93.3 6e-17 seq288616 91.5 2e-16 seq149597 86.0 1e-14 seq127196 82.4 1e-13 seq990633 77.0 5e-12 seq869389 75.2 2e-11 seq1694878 73.4 6e-11 seq344491 73.4 6e-11 >seq94791 Length=2561 Score = 250 bits (276), Expect = 4e-64 Identities = 220/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 1075 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 1016 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 1015 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 956 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 955 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 896 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 895 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 836 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 835 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 803 >seq125923 Length=12089 Score = 196 bits (216), Expect = 7e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 11424 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 11483 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 11484 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCT 11543 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 11544 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 11603 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 11604 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 11663 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 11664 AGTCGACATCG 11674 >seq62939 Length=2956 Score = 145 bits (160), Expect = 1e-32 Identities = 199/274 (73%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCT-TCCCAGC 62 || |||||| |||| | | ||| || |||| | |||| |||| ||| ||| | Sbjct 1445 GGTGGGCTTACTACTTATAAACTTTCGGCAGTTATTCTCTCCACACTTGGCTATCCAATG 1386 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | |||| || ||| | |||| ||||| || |||||||| |||||| Sbjct 1385 TTTACCGTGGGCACGATAACTCGTACACTAAAGGTCTGTCCTTCACGGTCCTCCCGTACT 1326 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| | |||| | ||| |||||| || Sbjct 1325 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCAGATATAAATAGAATTGTCTCACG 1266 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | |||||||||||||||| | | || | ||| ||| |||||| |||||||||||| ||| Sbjct 1265 ATGTTCTGAACCCAGCTCACATACCACATTATTGGACGAACAACCCAACCCTTGGAACCA 1206 Query 243 ACTTCAGCCCCAGGATGA-GACGAGCCGACATCG 275 || || | | ||| ||| || ||||||||| || Sbjct 1205 CCTACAACTCTAGG-TGATGAAGAGCCGACACCG 1173 >seq70269 Length=8252 Score = 125 bits (138), Expect = 1e-26 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| || || | | || ||| ||||||||| |||| ||||| ||| | Sbjct 3192 AACTTAGCTGTCCGGCGCTTCTATTCGCATAACAACTGGTACACCGTAGGTTGAACCAAC 3251 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGACGGAT 162 || |||||||||||||| ||| ||||| | || | ||| || || || ||| Sbjct 3252 CCAGTCCTCTCGTACTAGGGATGGCTCCACACAGTTCTCCCTTTAACACCAACAGTAGAT 3311 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| || ||| |||||| || |||||| || ||| ||| ||| || |||| || | ||| Sbjct 3312 AGGAACTGAAGTGTCTCACGTCGTTCTAAAGCCAACTCACGTACCACTTTCATCAGTGAA 3371 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 || || | ||||| | |||| | ||| |||||||||| || ||| ||| ||| Sbjct 3372 CAACCGAGCCCTTAGAACCTTCCTCAACCCCAGGATGTGATGAGTCGATATC 3423 >seq171023 Length=8004 Score = 123 bits (136), Expect = 4e-26 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATT 143 ||| ||||| ||||| | | ||| |||| |||||||| || |||||| || | Sbjct 1835 GGTACACCATAGGTTGAGCAAACCCATTCCTTTCGTACTAGGGCTGGCTCCTTGCAGTTC 1776 Query 144 TCCT----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 ||| || || | | |||||| || |||||||||| ||||||||| |||||| || Sbjct 1775 TCCCTTTAACACCAATGGTAGATAGGAACTGAACTGTCTCACGACGTTCTAAACCCAACT 1716 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 | || | ||| || ||||||| || |||||||||||||| ||||| |||||||||| Sbjct 1715 CATGTACGACTTCCATACGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATG 1656 Query 260 AGACGAGCCGACATCG 275 || ||| |||||||| Sbjct 1655 TGATGAGTCGACATCG 1640 >seq1780628 Length=233 Score = 109 bits (120), Expect = 8e-22 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 |||||||||||| || ||||||||| |||||||||| ||| || | |||||||||||||| Sbjct 71 GGACCGAACTGTTTCACGACGTTCTAAACCCAGCTCACGTACCACATTAATGGGCGAACA 130 Query 225 GCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| |||||| ||| || || | ||||| | |||||||||||| Sbjct 131 ACCCAAACCTTGGAACCACCTACAACTCCAGGTGGNNNNGAGCCGACATCG 181 >seq35104 Length=221 Score = 105 bits (116), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 187 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 128 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG-CTCCTCTCAAATTTCCT 147 |||| ||||| ||| ||| ||||||| |||||| |||| | |||||| || | ||| Sbjct 127 ACCATAGGTTGACCCAACCCAGTCCTCTTGTACTA-GGACTGGCTCCTCGCAGTTCTCCC 69 Query 148 ----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCG 203 || || ||| ||| || ||||||||||||| |||| |||| |||||| ||| || Sbjct 68 TTTAACACCAACGGTAGATGGGAACCGAACTGTCTCACGACATTCTAAACCCAACTCACG 9 Query 204 TGCCTCTT 211 | || ||| Sbjct 8 TACCACTT 1 >seq628092 Length=217 Score = 104 bits (114), Expect = 4e-20 Identities = 133/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 183 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 124 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||| ||||| ||| ||||||| | | ||| Sbjct 123 ACCATAGGTTGACCCAACCCAGTCCTCTCTTACTAGGGATGGCTCCTCATAGTTCTCCCT 64 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| ||||| ||||||||||||| |||||||| |||||| ||| ||| Sbjct 63 TTAACACCAACGGTAAATAGGAACCGAACTGTCTCATGACGTTCTAAACCCAACTCACGT 4 Query 205 GCC 207 || Sbjct 3 ACC 1 >seq1171748 Length=237 Score = 102 bits (112), Expect = 1e-19 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 117 CGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGT 176 ||||||| ||| || ||||||||| | | |||||| || ||| |||||||| ||| Sbjct 1 CGTACTATGGAAAGGTCCTCTCAATGGTATAAAGCCCACACCGAATATGGACCGAATTGT 60 Query 177 CTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 ||| || |||||||||||||||| ||| || | ||||||||||||||||| Sbjct 61 CTCATGATGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCC 111 >seq276324 Length=621 Score = 93.3 bits (102), Expect = 6e-17 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||||||||||||| ||||||||| |||||| ||| ||| || |||| || ||| Sbjct 36 GATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGC 95 Query 220 GAACAGCCCAACCCTTGGG 238 ||||| || |||||||||| Sbjct 96 GAACAACCGAACCCTTGGG 114 >seq288616 Length=1114 Score = 91.5 bits (100), Expect = 2e-16 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||| |||||||||||| || | || |||| |||||||||| ||| || | |||| ||| | Sbjct 247 ATATGGACCGAACTGTGTCACAACATTCTAAACCCAGCTCACGTACCGCATTAAGGGGTG 306 Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| ||||||| |||| ||| || || | ||| | | || ||||| |||||| Sbjct 307 AACAACCCAACCATTGGAACCACCTACAACTCCACGTGGCGAAGAGCCAACATCG 361 >seq149597 Length=2497 Score = 86.0 bits (94), Expect = 1e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 170 GAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCA 229 |||||||||| |||||||||||||||| ||| || | | ||||||||||||||||||| Sbjct 526 GAACTGTCTCACGACGTTCTGAACCCATCTCACGGATCGCATTAATGGGCGAACAGCCCA 467 Query 230 ACCCTTGGGACCTACTTCAG 249 | |||||| ||| || ||| Sbjct 466 ATCCTTGGAACCACCTACAG 447 >seq127196 Length=4683 Score = 82.4 bits (90), Expect = 1e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTG 205 |||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||| Sbjct 906 ACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTG 963 >seq990633 Length=645 Score = 77.0 bits (84), Expect = 5e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 211 TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGA 270 ||||||||||||||||||||||||||| ||| || |||| ||||| | || ||||||| Sbjct 549 TTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCTCCAGGTGGCGAAGAGCCGA 608 Query 271 CATCG 275 ||||| Sbjct 609 CATCG 613 >seq869389 Length=2904 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261 ||| || |||| || |||||||| || |||||||||||||| ||||| | | |||||| | Sbjct 78 CGTACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACTCTAGGATGTG 19 Query 262 ACGAGCCGACATCG 275 | ||| |||||||| Sbjct 18 ATGAGTCGACATCG 5 >seq1694878 Length=464 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 108 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 49 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 |||| ||||| ||| ||| |||||||||||||| || ||||||| Sbjct 48 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTC 1 >seq344491 Length=446 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 339 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 398 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 |||| ||||| ||| ||| |||||||||||||| || ||||||| Sbjct 399 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTC 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 765082756836