Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002035.1
Length=329
Score E
Sequences producing significant alignments: (Bits) Value
seq1865306 87.8 3e-15
seq71041 78.8 2e-12
>seq1865306
Length=381
Score = 87.8 bits (96), Expect = 3e-15
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 4 TTCGGCAATAGCGAAAAGGAAAACCACCATCGCGGCTTCCGGCCACTTCGCCAATCACCA 63
||||||||| ||||| ||||||| |||||| || ||||||||||||| | ||||| | |
Sbjct 159 TTCGGCAATCGCGAACAGGAAAATCACCATGGCCGCTTCCGGCCACTGC-CCAAT-AAGA 216
Query 64 TGGGCACCCAAGACAGCCAAAGACATCAAGGAGTAGATGTTCAATGTGAAGTTCTTTACA 123
||| || | || |||| |||||| | ||| |||||| | ||||| |||| |
Sbjct 217 ACGGCGCCGACAACTGCCAGGCACATCAGGAAGTTGATGTTGAGGGTGAACGTCTTGAGC 276
Query 124 GCGATCCACCCCTTCTTCAGTAGTTGGTAGACCAGCAGTAAGAATGGACAGCGCAGCCAA 183
|| | |||||| || ||| ||||| | || || || || ||||| | | | |||
Sbjct 277 GCTACCCACCCTTTGCGCAG-CGTTGGGATGCCTGCCGTGAGGATGGAAATCAGGGACAA 335
Query 184 GGACATTTACAGGC 197
|| | ||||||||
Sbjct 336 GG-CGATTACAGGC 348
>seq71041
Length=8064
Score = 78.8 bits (86), Expect = 2e-12
Identities = 120/167 (72%), Gaps = 3/167 (2%)
Strand=Plus/Plus
Query 5 TCGGCAATAGCGAAAAGGAAAACCACCATCGCGGCTTCCGGCCACTTCGCCAATCACCAT 64
|||||||| ||||| ||||||| |||||| || |||||||||||| | ||| |||| |
Sbjct 1581 TCGGCAATCGCGAACAGGAAAATCACCATAGCCGCTTCCGGCCAC-TGGCCGATCAGGA- 1638
Query 65 GGGCACCCAAGACAGCCAAAGACATCAAGGAGTAGATGTTCAATGTGAAGTTCTTTACAG 124
||| || | ||| |||| |||||||| | | |||||| | || | |||| | |
Sbjct 1639 CGGCGCCTACGACTGCCAGGCACATCAAGAAATTGATGTTGAGGGTAAGCGTCTTGAGCG 1698
Query 125 CGATCCACCCCTTCTTCAGTAGTTGGTAGACCAGCAGTAAGAATGGA 171
| | |||||| || || ||||| | ||||| || || |||||
Sbjct 1699 CCACCCACCCTTTTCGCA-ACGTTGGGATGCCAGCCGTGAGGATGGA 1744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930651628896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |