Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002035.1 Length=329 Score E Sequences producing significant alignments: (Bits) Value seq1865306 87.8 3e-15 seq71041 78.8 2e-12 >seq1865306 Length=381 Score = 87.8 bits (96), Expect = 3e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 4 TTCGGCAATAGCGAAAAGGAAAACCACCATCGCGGCTTCCGGCCACTTCGCCAATCACCA 63 ||||||||| ||||| ||||||| |||||| || ||||||||||||| | ||||| | | Sbjct 159 TTCGGCAATCGCGAACAGGAAAATCACCATGGCCGCTTCCGGCCACTGC-CCAAT-AAGA 216 Query 64 TGGGCACCCAAGACAGCCAAAGACATCAAGGAGTAGATGTTCAATGTGAAGTTCTTTACA 123 ||| || | || |||| |||||| | ||| |||||| | ||||| |||| | Sbjct 217 ACGGCGCCGACAACTGCCAGGCACATCAGGAAGTTGATGTTGAGGGTGAACGTCTTGAGC 276 Query 124 GCGATCCACCCCTTCTTCAGTAGTTGGTAGACCAGCAGTAAGAATGGACAGCGCAGCCAA 183 || | |||||| || ||| ||||| | || || || || ||||| | | | ||| Sbjct 277 GCTACCCACCCTTTGCGCAG-CGTTGGGATGCCTGCCGTGAGGATGGAAATCAGGGACAA 335 Query 184 GGACATTTACAGGC 197 || | |||||||| Sbjct 336 GG-CGATTACAGGC 348 >seq71041 Length=8064 Score = 78.8 bits (86), Expect = 2e-12 Identities = 120/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 5 TCGGCAATAGCGAAAAGGAAAACCACCATCGCGGCTTCCGGCCACTTCGCCAATCACCAT 64 |||||||| ||||| ||||||| |||||| || |||||||||||| | ||| |||| | Sbjct 1581 TCGGCAATCGCGAACAGGAAAATCACCATAGCCGCTTCCGGCCAC-TGGCCGATCAGGA- 1638 Query 65 GGGCACCCAAGACAGCCAAAGACATCAAGGAGTAGATGTTCAATGTGAAGTTCTTTACAG 124 ||| || | ||| |||| |||||||| | | |||||| | || | |||| | | Sbjct 1639 CGGCGCCTACGACTGCCAGGCACATCAAGAAATTGATGTTGAGGGTAAGCGTCTTGAGCG 1698 Query 125 CGATCCACCCCTTCTTCAGTAGTTGGTAGACCAGCAGTAAGAATGGA 171 | | |||||| || || ||||| | ||||| || || ||||| Sbjct 1699 CCACCCACCCTTTTCGCA-ACGTTGGGATGCCAGCCGTGAGGATGGA 1744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930651628896