Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002055.1
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
seq29707 132 8e-29
seq859820 89.7 8e-16
>seq29707
Length=607
Score = 132 bits (146), Expect = 8e-29
Identities = 153/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149
||||| || ||||| ||||| | | || || ||||| ||| || |||||||||| ||
Sbjct 375 AGCACGGCCAGGAACGCTTCCT-GCGGGATCTCCACACGGCCGACCTGCTTCATGCGCTT 433
Query 150 TTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCA 209
|| || |||| ||||| || || ||||| ||| || ||||| || || |||||
Sbjct 434 CTTGCCTTCCTTCTGCTTTTCCAGAAGCTTCTTCTTGCGCGAAACGTCGCCACCATAGCA 493
Query 210 TTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCC 269
|||||||| |||||||| | | |||||||| | ||| || || ||||||||| |||
Sbjct 494 CTTGGCCAGCACGTTCTTGCGCATCGCCTTGACCGTGGTGCGGGCGATGATCTGCGAGCC 553
Query 270 AATGGCGGCCTGGATCGCGACGTCG 294
| |||||||||||| || ||||||
Sbjct 554 GACGGCGGCCTGGATGGCCACGTCG 578
>seq859820
Length=5615
Score = 89.7 bits (98), Expect = 8e-16
Identities = 99/131 (76%), Gaps = 1/131 (1%)
Strand=Plus/Minus
Query 100 GGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCC 159
|||| || |||| | ||||| || ||| || || || |||||||| || || || ||
Sbjct 3656 GGAATGCCTCTTGG-GGAATATCGACGGATCCAACACGTTTCATGCGCTTCTTCCCTTCC 3598
Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219
|| |||||||| |||||||| || ||| | | ||||| || ||||| ||||||||
Sbjct 3597 TTCTGCTTCTCTAGCAGCTTCTTTTTGCGGGTGATATCACCACCATAGCACTTGGCCAGA 3538
Query 220 ACGTTCTTTCT 230
|||||||||||
Sbjct 3537 ACGTTCTTTCT 3527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 824658873147
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |