Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq29707 132 8e-29 seq859820 89.7 8e-16 >seq29707 Length=607 Score = 132 bits (146), Expect = 8e-29 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 90 AGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTT 149 ||||| || ||||| ||||| | | || || ||||| ||| || |||||||||| || Sbjct 375 AGCACGGCCAGGAACGCTTCCT-GCGGGATCTCCACACGGCCGACCTGCTTCATGCGCTT 433 Query 150 TTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCA 209 || || |||| ||||| || || ||||| ||| || ||||| || || ||||| Sbjct 434 CTTGCCTTCCTTCTGCTTTTCCAGAAGCTTCTTCTTGCGCGAAACGTCGCCACCATAGCA 493 Query 210 TTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCC 269 |||||||| |||||||| | | |||||||| | ||| || || ||||||||| ||| Sbjct 494 CTTGGCCAGCACGTTCTTGCGCATCGCCTTGACCGTGGTGCGGGCGATGATCTGCGAGCC 553 Query 270 AATGGCGGCCTGGATCGCGACGTCG 294 | |||||||||||| || |||||| Sbjct 554 GACGGCGGCCTGGATGGCCACGTCG 578 >seq859820 Length=5615 Score = 89.7 bits (98), Expect = 8e-16 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 100 GGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCC 159 |||| || |||| | ||||| || ||| || || || |||||||| || || || || Sbjct 3656 GGAATGCCTCTTGG-GGAATATCGACGGATCCAACACGTTTCATGCGCTTCTTCCCTTCC 3598 Query 160 TTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGT 219 || |||||||| |||||||| || ||| | | ||||| || ||||| |||||||| Sbjct 3597 TTCTGCTTCTCTAGCAGCTTCTTTTTGCGGGTGATATCACCACCATAGCACTTGGCCAGA 3538 Query 220 ACGTTCTTTCT 230 ||||||||||| Sbjct 3537 ACGTTCTTTCT 3527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 824658873147