Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002062.1 Length=351 Score E Sequences producing significant alignments: (Bits) Value seq50545 127 4e-27 >seq50545 Length=291 Score = 127 bits (140), Expect = 4e-27 Identities = 192/266 (72%), Gaps = 19/266 (7%) Strand=Plus/Minus Query 100 TTTCATTGAAGCGCCCGTAGAACTCATACCAGGCCCACACGCCCACCACACTGAGGATGA 159 |||| || ||||||||| ||| || | ||||||| ||||| | | ||| | || Sbjct 291 TTTCGTTAAAGCGCCCGATGAATTCGTGATAGGCCCAGACGCCGGCAATGGCGAGCAGGA 232 Query 160 CGATCAGCGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGGGTT---GGTGTCTTTGG 216 ||| || || ||| | | ||||||||| ||||||||||||||||| |||||| || Sbjct 231 CGACCACGGCGAGGGCCAGCAGCATCACCTTGCGTTTGCGCGGGTTGCCGGTGTC--CGG 174 Query 217 GTTGTTCGGTC----GCGTTGGTGCTTTCGGCAGTGGCCATGACAAATACCTCAAATTAT 272 | |||| ||| || | |||| ||||||||||||||||||||||||||| ||||| Sbjct 173 GGTGTT--GTCTTGAGCTTGGGTGTTTTCGGCAGTGGCCATGACAAATACCTTGAATTA- 117 Query 273 TCCGTGCG-TGTTGCGGGGGTGG---TCGCGGC---CACGCTGTTGGCGTGATACCCGCC 325 | ||||| | |||||| ||| | || || || | | | | ||| | ||||| Sbjct 116 TGGGTGCGACGAGGCGGGGCTGGCGTTGGCTGCGCTCAGGTTTTCACCCTGAAAGCCGCC 57 Query 326 ACCCAGGGCCTGCATCAATTGAATCG 351 ||||| || ||||||| |||||||| Sbjct 56 GCCCAGCGCTTGCATCAGTTGAATCG 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 999588786592