Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq52964 192 1e-46 seq1975295 95.1 3e-17 >seq52964 Length=226 Score = 192 bits (212), Expect = 1e-46 Identities = 177/223 (79%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 86 CGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCGGCCTGGGGCATCAAGGACAACGA 145 || ||| |||| |||| ||||||||| | ||| || |||||||||||| |||| ||| Sbjct 226 CGGCATGGCCAACTCATGCAGGCCATCACCGCGTCCATCCTGGGGCATCAGCGACAGCGA 167 Query 146 ATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCA 205 ||||||||| || |||||||| || ||||| || ||||| |||||||| ||||||||||| Sbjct 166 ATAACTGACATCGAGCATGCGCGCGAGGTTTTCAGCGCGTTCCAGGTAGCGCGACATCCA 107 Query 206 ATACAGATCTGCAGCTGTTCTACGCAGCAT--ACTCAGCCCTCCACCACCCAGGTGTCCT 263 |||| ||| | || ||||||| || ||| |||| |||| |||||||||||||| | Sbjct 106 GTACAAATCCGAGGCAGTTCTACTCAACATGGCATCAGTCCTCGACCACCCAGGTGTCTT 47 Query 264 TGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTC 306 |||| || || || || ||||| || || ||||| || ||||| Sbjct 46 TGGTGCCGCCACCCTGAGACGAATTAACCACCAGTGACCCTTC 4 >seq1975295 Length=221 Score = 95.1 bits (104), Expect = 3e-17 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 153 ACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGA 212 || || |||||||| ||| ||||||||||||||| ||| |||| |||||| |||| Sbjct 82 ACGTCGAGCATGCGGGCCGTGTTCTCGGCGCGCTCGGTGTAGCGCGCCATCCAGTACAAG 141 Query 213 TCTGCAGCTGTTCTACGCAGCATACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCAC 272 | | || || | | ||||| ||| |||||| | ||||||||||||||| || | Sbjct 142 TGGTCTGCGGTGCGGCTCAGCA---TCATTCCTCCAGTATCCAGGTGTCCTTGGTGCCGC 198 Query 273 CGCCTTGCGACGAGTTGACGACC 295 |||| |||||||| || || ||| Sbjct 199 CGCCCTGCGACGAATTCACCACC 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1096727508800