Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002110.1
Length=382
Score E
Sequences producing significant alignments: (Bits) Value
seq52964 192 1e-46
seq1975295 95.1 3e-17
>seq52964
Length=226
Score = 192 bits (212), Expect = 1e-46
Identities = 177/223 (79%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 86 CGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCGGCCTGGGGCATCAAGGACAACGA 145
|| ||| |||| |||| ||||||||| | ||| || |||||||||||| |||| |||
Sbjct 226 CGGCATGGCCAACTCATGCAGGCCATCACCGCGTCCATCCTGGGGCATCAGCGACAGCGA 167
Query 146 ATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCA 205
||||||||| || |||||||| || ||||| || ||||| |||||||| |||||||||||
Sbjct 166 ATAACTGACATCGAGCATGCGCGCGAGGTTTTCAGCGCGTTCCAGGTAGCGCGACATCCA 107
Query 206 ATACAGATCTGCAGCTGTTCTACGCAGCAT--ACTCAGCCCTCCACCACCCAGGTGTCCT 263
|||| ||| | || ||||||| || ||| |||| |||| |||||||||||||| |
Sbjct 106 GTACAAATCCGAGGCAGTTCTACTCAACATGGCATCAGTCCTCGACCACCCAGGTGTCTT 47
Query 264 TGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGAGCCTTC 306
|||| || || || || ||||| || || ||||| || |||||
Sbjct 46 TGGTGCCGCCACCCTGAGACGAATTAACCACCAGTGACCCTTC 4
>seq1975295
Length=221
Score = 95.1 bits (104), Expect = 3e-17
Identities = 107/143 (75%), Gaps = 3/143 (2%)
Strand=Plus/Plus
Query 153 ACTTCCAGCATGCGTGCCAGGTTCTCGGCGCGCTCCAGGTAACGCGACATCCAATACAGA 212
|| || |||||||| ||| ||||||||||||||| ||| |||| |||||| ||||
Sbjct 82 ACGTCGAGCATGCGGGCCGTGTTCTCGGCGCGCTCGGTGTAGCGCGCCATCCAGTACAAG 141
Query 213 TCTGCAGCTGTTCTACGCAGCATACTCAGCCCTCCACCACCCAGGTGTCCTTGGTTCCAC 272
| | || || | | ||||| ||| |||||| | ||||||||||||||| || |
Sbjct 142 TGGTCTGCGGTGCGGCTCAGCA---TCATTCCTCCAGTATCCAGGTGTCCTTGGTGCCGC 198
Query 273 CGCCTTGCGACGAGTTGACGACC 295
|||| |||||||| || || |||
Sbjct 199 CGCCCTGCGACGAATTCACCACC 221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1096727508800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |