Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq59074 170 5e-40
seq49923 125 2e-26
seq966087 104 6e-20
seq67162 104 6e-20
seq54886 102 2e-19
seq77026 95.1 3e-17
seq226015 89.7 1e-15
seq59300 75.2 3e-11
>seq59074
Length=14123
Score = 170 bits (188), Expect = 5e-40
Identities = 154/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 111 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 170
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 171 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 230
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 231 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 290
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 291 CCAACTACCTAAT 303
>seq49923
Length=273
Score = 125 bits (138), Expect = 2e-26
Identities = 147/195 (75%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 221 AGGCCCGAAGGTCCCCCTCTTTGGTCT-TGCGACGTTATGCGGTATTAGCCACCGTTTCC 279
||| |||||| ||||| |||| | | ||||| ||||||||||||| || ||||
Sbjct 16 AGGTCCGAAGATCCCCTGCTTTCTCCCGTAGGACGT-ATGCGGTATTAGCATCCCTTTCG 74
Query 280 AGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGT 339
| ||| |||||| | | || ||| |||| | |||||||||||||||||| ||
Sbjct 75 AAATGTTGTCCCCCACTAATAGCCAGATTCCTAAGTATTACTCACCCGTCCGCCGCTA-- 132
Query 340 CAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCC 399
|| || |||||||| | || | ||| ||||||||||||||||| ||||||||||
Sbjct 133 -AGATCAGTAGCAAGCTACCTC---TCTCCGCTCGACTTGCATGTGTTAAGCCTGCCGCC 188
Query 400 AGCGTTCAATCTGAG 414
|||||||||||||||
Sbjct 189 AGCGTTCAATCTGAG 203
>seq966087
Length=2119
Score = 104 bits (114), Expect = 6e-20
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108
||||||| ||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct 72 CAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 13
Query 109 GTCTCAGTTCCA 120
|||||||| |||
Sbjct 12 GTCTCAGTCCCA 1
>seq67162
Length=11945
Score = 104 bits (114), Expect = 6e-20
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136
|||||||||||| | |||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 1858 CCACTGCTGCCTTCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 1917
Query 137 TCTCAGACCAGCTAG 151
|||| ||||||| ||
Sbjct 1918 TCTCGGACCAGCGAG 1932
>seq54886
Length=222
Score = 102 bits (112), Expect = 2e-19
Identities = 124/164 (76%), Gaps = 15/164 (9%)
Strand=Plus/Minus
Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCC--TCCATCAGGCAGTTTCC-CA 312
||| ||||||||| | |||||||||| | ||||||| |||| ||||| || | ||
Sbjct 161 TATCCGGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTCCAG--GGCAGGTTGCTCA 104
Query 313 GACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT--GCTTCCTGTTACCG 370
|||||||||||| ||||||| || | ||||| |||| ||||| ||||
Sbjct 103 CGTGTTACTCACCCGTTCGCCACTGATCCACCAAGCA---AGCTTGGCTTC-----ACCG 52
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||||||||| || |||||||||||||| |||||
Sbjct 51 TTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCATCCTGAG 8
>seq77026
Length=2228
Score = 95.1 bits (104), Expect = 3e-17
Identities = 123/169 (73%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||||||| ||| || || | || ||| ||||| |||| ||||| || |||||||
Sbjct 589 CCTTCTTCACACATGCAATATTGTTGGATCGGGCTTTCGCCTATTGTCTAAGATTCCCCG 530
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
||||| || || || | ||| | |||||||||||| ||||||||| || ||||||
Sbjct 529 CTGCT-CCACCTGTGTGGGTCCAGGCCGTGTCTCAGTCCCAGTGTGGTTGATCATCCGAA 471
Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188
|||||| || | ||| | | || ||| | | ||||| |||||||
Sbjct 470 AAGACCATGTAAGCATCATTGGCTTGGTCAGACTTTACCTAACCAACTA 422
>seq226015
Length=1568
Score = 89.7 bits (98), Expect = 1e-15
Identities = 108/148 (73%), Gaps = 17/148 (11%)
Strand=Plus/Plus
Query 266 TAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACC 325
|||| |||||||||||| ||| | ||||||| ||||| ||| | | |||||||||
Sbjct 1 TAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACC 60
Query 326 CGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTG 385
||| ||||||| ||| || || |||| ||||||||||||||||||
Sbjct 61 CGTTCGCCACT------GGAAACACCA-----CTTC------CCGTTCGACTTGCATGTG 103
Query 386 TTAGGCCTGCCGCCAGCGTTCAATCTGA 413
||| || |||||| |||||||| ||||
Sbjct 104 TTAAGCATGCCGCTAGCGTTCATCCTGA 131
>seq59300
Length=16558
Score = 75.2 bits (82), Expect = 3e-11
Identities = 71/91 (78%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108
|| |||| | || | || | || |||| ||| | ||| ||||| |||||| | ||||||
Sbjct 1194 CAAGCTTTCACCTAGTGCGAAAAATTCTCCATTACTGTCTCCCTTAGGAGCTTAGACCGT 1253
Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|||||| | | |||||||||| |||||||||
Sbjct 1254 GTCTCATTCCAAGTGTGGCTGATCATCCTCT 1284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1196999738176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |