Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq59074 170 5e-40 seq49923 125 2e-26 seq966087 104 6e-20 seq67162 104 6e-20 seq54886 102 2e-19 seq77026 95.1 3e-17 seq226015 89.7 1e-15 seq59300 75.2 3e-11 >seq59074 Length=14123 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 111 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 170 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 171 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 230 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 231 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 290 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 291 CCAACTACCTAAT 303 >seq49923 Length=273 Score = 125 bits (138), Expect = 2e-26 Identities = 147/195 (75%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 221 AGGCCCGAAGGTCCCCCTCTTTGGTCT-TGCGACGTTATGCGGTATTAGCCACCGTTTCC 279 ||| |||||| ||||| |||| | | ||||| ||||||||||||| || |||| Sbjct 16 AGGTCCGAAGATCCCCTGCTTTCTCCCGTAGGACGT-ATGCGGTATTAGCATCCCTTTCG 74 Query 280 AGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGT 339 | ||| |||||| | | || ||| |||| | |||||||||||||||||| || Sbjct 75 AAATGTTGTCCCCCACTAATAGCCAGATTCCTAAGTATTACTCACCCGTCCGCCGCTA-- 132 Query 340 CAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCC 399 || || |||||||| | || | ||| ||||||||||||||||| |||||||||| Sbjct 133 -AGATCAGTAGCAAGCTACCTC---TCTCCGCTCGACTTGCATGTGTTAAGCCTGCCGCC 188 Query 400 AGCGTTCAATCTGAG 414 ||||||||||||||| Sbjct 189 AGCGTTCAATCTGAG 203 >seq966087 Length=2119 Score = 104 bits (114), Expect = 6e-20 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108 ||||||| ||||||||| | || |||||||||||||||||||||||||||||||| |||| Sbjct 72 CAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGT 13 Query 109 GTCTCAGTTCCA 120 |||||||| ||| Sbjct 12 GTCTCAGTCCCA 1 >seq67162 Length=11945 Score = 104 bits (114), Expect = 6e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 |||||||||||| | |||||||||||| |||||||||||| |||||||||||| |||||| Sbjct 1858 CCACTGCTGCCTTCTGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCC 1917 Query 137 TCTCAGACCAGCTAG 151 |||| ||||||| || Sbjct 1918 TCTCGGACCAGCGAG 1932 >seq54886 Length=222 Score = 102 bits (112), Expect = 2e-19 Identities = 124/164 (76%), Gaps = 15/164 (9%) Strand=Plus/Minus Query 256 TATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCC--TCCATCAGGCAGTTTCC-CA 312 ||| ||||||||| | |||||||||| | ||||||| |||| ||||| || | || Sbjct 161 TATCCGGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTCCAG--GGCAGGTTGCTCA 104 Query 313 GACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT--GCTTCCTGTTACCG 370 |||||||||||| ||||||| || | ||||| |||| ||||| |||| Sbjct 103 CGTGTTACTCACCCGTTCGCCACTGATCCACCAAGCA---AGCTTGGCTTC-----ACCG 52 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||| || |||||||||||||| ||||| Sbjct 51 TTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCATCCTGAG 8 >seq77026 Length=2228 Score = 95.1 bits (104), Expect = 3e-17 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| ||| || || | || ||| ||||| |||| ||||| || ||||||| Sbjct 589 CCTTCTTCACACATGCAATATTGTTGGATCGGGCTTTCGCCTATTGTCTAAGATTCCCCG 530 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 ||||| || || || | ||| | |||||||||||| ||||||||| || |||||| Sbjct 529 CTGCT-CCACCTGTGTGGGTCCAGGCCGTGTCTCAGTCCCAGTGTGGTTGATCATCCGAA 471 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 |||||| || | ||| | | || ||| | | ||||| ||||||| Sbjct 470 AAGACCATGTAAGCATCATTGGCTTGGTCAGACTTTACCTAACCAACTA 422 >seq226015 Length=1568 Score = 89.7 bits (98), Expect = 1e-15 Identities = 108/148 (73%), Gaps = 17/148 (11%) Strand=Plus/Plus Query 266 TAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACC 325 |||| |||||||||||| ||| | ||||||| ||||| ||| | | ||||||||| Sbjct 1 TAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACC 60 Query 326 CGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTG 385 ||| ||||||| ||| || || |||| |||||||||||||||||| Sbjct 61 CGTTCGCCACT------GGAAACACCA-----CTTC------CCGTTCGACTTGCATGTG 103 Query 386 TTAGGCCTGCCGCCAGCGTTCAATCTGA 413 ||| || |||||| |||||||| |||| Sbjct 104 TTAAGCATGCCGCTAGCGTTCATCCTGA 131 >seq59300 Length=16558 Score = 75.2 bits (82), Expect = 3e-11 Identities = 71/91 (78%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 49 CAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGT 108 || |||| | || | || | || |||| ||| | ||| ||||| |||||| | |||||| Sbjct 1194 CAAGCTTTCACCTAGTGCGAAAAATTCTCCATTACTGTCTCCCTTAGGAGCTTAGACCGT 1253 Query 109 GTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||| | | |||||||||| ||||||||| Sbjct 1254 GTCTCATTCCAAGTGTGGCTGATCATCCTCT 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1196999738176