Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq59074 248 3e-63 seq77026 161 3e-37 seq832032 134 4e-29 seq817092 134 4e-29 seq1212451 132 1e-28 seq1508883 98.7 3e-18 seq966087 98.7 3e-18 seq882205 86.0 2e-14 seq165799 82.4 2e-13 seq94780 82.4 2e-13 seq1859305 80.6 8e-13 seq1123124 80.6 8e-13 seq67162 80.6 8e-13 seq857911 75.2 3e-11 >seq59074 Length=14123 Score = 248 bits (274), Expect = 3e-63 Identities = 238/303 (79%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 303 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 244 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 243 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 184 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 183 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 124 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 123 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 64 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 63 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 4 Query 464 CTG 466 ||| Sbjct 3 CTG 1 >seq77026 Length=2228 Score = 161 bits (178), Expect = 3e-37 Identities = 231/320 (72%), Gaps = 9/320 (3%) Strand=Plus/Plus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||||| |||||| | || |||||| | | ||| || | || || ||||| Sbjct 422 TAGTTGGTTAGGTAAAGTCTGACCAAGCCAATGATGCTTACATGGTCTTTTCGGATGATC 481 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 ||||| ||| |||||||||||| | || | || || || ||||| ||||||| || Sbjct 482 AACCACACTGGGACTGAGACACGGCCTGGACCCACACAGGTGG-AGCAGCGGGGAATCTT 540 Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGT 351 ||||| ||| |||||| ||| || ||| || || | || ||||| | | | | Sbjct 541 AGACAATAGGCGAAAGCCCGATCCAACAATATTGCATGTGTGAAGAAGGGCAATGCCACT 600 Query 352 CGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409 ||||||||| || || || | || |||| | ||||||||| ||||||||||||| Sbjct 601 TGTAAAGCTCCTTCGTCGAGTGCGCGATCATGATAGGACTTGAGGAAGAAGCCCCGGCTA 660 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469 ||| |||||||||||| ||||||| || ||||| || ||| | |||||| ||| ||| Sbjct 661 ACTCCGTGCCAGCAGCAGCGGTAAGAC---GGGGGGGAGTGTTCTTCGGAATGACT-GGG 716 Query 470 CGTAAAGGGTGCGTAGGTGG 489 ||||||||| |||||| || Sbjct 717 CGTAAAGGGCACGTAGGCGG 736 >seq832032 Length=212 Score = 134 bits (148), Expect = 4e-29 Identities = 138/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 325 CCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGA 382 ||||||| | |||||||| |||||||| || ||| | ||| ||||| | |||| Sbjct 1 CCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGA 60 Query 383 CGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG 442 ||||| |||||| |||| ||||||||| ||||||||||||||||||| || ||| Sbjct 61 CGGTATCTGAGGAATAAGCATCGGCTAACTCAGTGCCAGCAGCCGCGGTAAGACAGAGGA 120 Query 443 GGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || ||||||||||||||| | | |||||||||| || |||||||| || | ||||| Sbjct 121 TGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 177 >seq817092 Length=212 Score = 134 bits (148), Expect = 4e-29 Identities = 138/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 325 CCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGA 382 ||||||| | |||||||| |||||||| || ||| | ||| ||||| | |||| Sbjct 212 CCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGA 153 Query 383 CGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG 442 ||||| |||||| |||| ||||||||| ||||||||||||||||||| || ||| Sbjct 152 CGGTATCTGAGGAATAAGCATCGGCTAACTCGGTGCCAGCAGCCGCGGTAAGACAGAGGA 93 Query 443 GGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || ||||||||||||||| | | |||||||||| || |||||||| || | ||||| Sbjct 92 TGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 36 >seq1212451 Length=387 Score = 132 bits (146), Expect = 1e-28 Identities = 164/220 (75%), Gaps = 12/220 (5%) Strand=Plus/Plus Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| ||| |||||||| |||||| || |||||| ||| || | || Sbjct 1 AGCAGTGGGGAATCTTGGACAATGGGTGAAAGCCCAATCCAGCAATATCGCATGCGTGAA 60 Query 338 GAAGGCCTTCGGGTC--GTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAG 393 ||||| | | || ||| |||||| || || || | || ||||| |||| ||| Sbjct 61 GAAGGGCAATGCCTCTTGTACAGCTCTTTCGTCGAGTGCGTGATCATGACATTACTCGAG 120 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC-----GTAGG--GGGCT 446 || |||||||||||||||| |||||||| |||||||||| || || || |||| Sbjct 121 GAAGAAGCCCCGGCTAACTCCGTGCCAGTAGCCGCGGTATGACGGGCGGTGGGGCGGGCA 180 Query 447 AGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGG 486 || ||| | |||||| ||| |||||||||||| |||||| Sbjct 181 AGTGTTCTTCGGAATGACT-GGGCGTAAAGGGCACGTAGG 219 >seq1508883 Length=202 Score = 98.7 bits (108), Expect = 3e-18 Identities = 89/111 (80%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 199 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 140 Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||||| | | | |||||||| ||| || ||||| || | ||||| Sbjct 139 GTTATCCGGAATGA-TTGTGCGTAAAGAGTGTGTCGGTGGCTTTTCAAGTC 90 >seq966087 Length=2119 Score = 98.7 bits (108), Expect = 3e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 242 TGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATG 301 ||| |||||||||||| ||| |||||||||||||||||||||||||||| || | ||||| Sbjct 1 TGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATG 60 Query 302 GGCAAAAGCCTG 313 ||| |||||||| Sbjct 61 GGCGAAAGCCTG 72 >seq882205 Length=2375 Score = 86.0 bits (94), Expect = 2e-14 Identities = 104/139 (75%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 353 GTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAA 410 |||||||||| | || || | || ||||| ||| ||||| ||||||||||| || Sbjct 1372 GTAAAGCTCTTTTGTCGAGTGTGCAATCATGACATGACTCGAGGAAGAAGCCCCGGCAAA 1313 Query 411 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGC 470 || ||||| | || | | ||||| || |||||| || ||| | || ||| ||| |||| Sbjct 1312 CTCCGTGCGAACAACTGTGGTAAGAC---GGGGGCAAGTGTTCTTCGAAATGACT-GGGC 1257 Query 471 GTAAAGGGTGCGTAGGTGG 489 ||||||||| |||||| || Sbjct 1256 GTAAAGGGTACGTAGGCGG 1238 >seq165799 Length=1184 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||||||||||||||| |||||||||||||||||||| || |||||| || ||| | | Sbjct 218 GAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTGTTCTTC 159 Query 457 GGAATTACTG 466 ||||| |||| Sbjct 158 GGAATGACTG 149 >seq94780 Length=20738 Score = 82.4 bits (90), Expect = 2e-13 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 411 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGC 470 || |||||||||||||||||||| ||| |||||| || ||| | |||||| ||| |||| Sbjct 20738 CTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACT-GGGC 20680 Query 471 GTAAAGGGTGCGTAGGTGGT 490 |||||||| |||||| ||| Sbjct 20679 GTAAAGGGCACGTAGGCGGT 20660 >seq1859305 Length=241 Score = 80.6 bits (88), Expect = 8e-13 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 336 ATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAG 393 |||| |||| |||||||| || ||| | ||| ||||| | ||||||||| |||| Sbjct 137 ATGACTGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAG 196 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 || |||| ||||||||| ||||||||||||||||||| || Sbjct 197 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGAC 239 >seq1123124 Length=2189 Score = 80.6 bits (88), Expect = 8e-13 Identities = 85/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 |||||| |||| ||||||||| |||||||| |||||||||| || ||| || ||| Sbjct 2187 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCTGCCGCGGTAAGACAGAGGATGCAAGC 2128 Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||||| | | ||||||| | | |||||||| || ||||| Sbjct 2127 GTTATCCGGAATGA-TTGGGCGTACAACATTTGTAGGTGGCTTTACAAGTC 2078 >seq67162 Length=11945 Score = 80.6 bits (88), Expect = 8e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||| |||||||||||| ||| |||||||| | |||||||| Sbjct 1921 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACAGAAGGCAGCA 1862 Query 282 GTGG 285 |||| Sbjct 1861 GTGG 1858 >seq857911 Length=7183 Score = 75.2 bits (82), Expect = 3e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGC 215 |||||||||||||||||||||| ||| || |||||||| ||||| |||||||||| Sbjct 3461 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCATGGCGATGATCAGTAGC 3516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466481354624