Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq59074 248 3e-63
seq77026 161 3e-37
seq832032 134 4e-29
seq817092 134 4e-29
seq1212451 132 1e-28
seq1508883 98.7 3e-18
seq966087 98.7 3e-18
seq882205 86.0 2e-14
seq165799 82.4 2e-13
seq94780 82.4 2e-13
seq1859305 80.6 8e-13
seq1123124 80.6 8e-13
seq67162 80.6 8e-13
seq857911 75.2 3e-11
>seq59074
Length=14123
Score = 248 bits (274), Expect = 3e-63
Identities = 238/303 (79%), Gaps = 4/303 (1%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| | | ||| |||| | || ||
Sbjct 303 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 244
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 243 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 184
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 183 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 124
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||||
Sbjct 123 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 64
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| |
Sbjct 63 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 4
Query 464 CTG 466
|||
Sbjct 3 CTG 1
>seq77026
Length=2228
Score = 161 bits (178), Expect = 3e-37
Identities = 231/320 (72%), Gaps = 9/320 (3%)
Strand=Plus/Plus
Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233
|||||||| |||||| | || |||||| | | ||| || | || || |||||
Sbjct 422 TAGTTGGTTAGGTAAAGTCTGACCAAGCCAATGATGCTTACATGGTCTTTTCGGATGATC 481
Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293
||||| ||| |||||||||||| | || | || || || ||||| ||||||| ||
Sbjct 482 AACCACACTGGGACTGAGACACGGCCTGGACCCACACAGGTGG-AGCAGCGGGGAATCTT 540
Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGT 351
||||| ||| |||||| ||| || ||| || || | || ||||| | | | |
Sbjct 541 AGACAATAGGCGAAAGCCCGATCCAACAATATTGCATGTGTGAAGAAGGGCAATGCCACT 600
Query 352 CGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409
||||||||| || || || | || |||| | ||||||||| |||||||||||||
Sbjct 601 TGTAAAGCTCCTTCGTCGAGTGCGCGATCATGATAGGACTTGAGGAAGAAGCCCCGGCTA 660
Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469
||| |||||||||||| ||||||| || ||||| || ||| | |||||| ||| |||
Sbjct 661 ACTCCGTGCCAGCAGCAGCGGTAAGAC---GGGGGGGAGTGTTCTTCGGAATGACT-GGG 716
Query 470 CGTAAAGGGTGCGTAGGTGG 489
||||||||| |||||| ||
Sbjct 717 CGTAAAGGGCACGTAGGCGG 736
>seq832032
Length=212
Score = 134 bits (148), Expect = 4e-29
Identities = 138/178 (78%), Gaps = 3/178 (2%)
Strand=Plus/Plus
Query 325 CCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGA 382
||||||| | |||||||| |||||||| || ||| | ||| ||||| | ||||
Sbjct 1 CCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGA 60
Query 383 CGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG 442
||||| |||||| |||| ||||||||| ||||||||||||||||||| || |||
Sbjct 61 CGGTATCTGAGGAATAAGCATCGGCTAACTCAGTGCCAGCAGCCGCGGTAAGACAGAGGA 120
Query 443 GGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|| ||||||||||||||| | | |||||||||| || |||||||| || | |||||
Sbjct 121 TGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 177
>seq817092
Length=212
Score = 134 bits (148), Expect = 4e-29
Identities = 138/178 (78%), Gaps = 3/178 (2%)
Strand=Plus/Minus
Query 325 CCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGA 382
||||||| | |||||||| |||||||| || ||| | ||| ||||| | ||||
Sbjct 212 CCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGA 153
Query 383 CGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGG 442
||||| |||||| |||| ||||||||| ||||||||||||||||||| || |||
Sbjct 152 CGGTATCTGAGGAATAAGCATCGGCTAACTCGGTGCCAGCAGCCGCGGTAAGACAGAGGA 93
Query 443 GGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|| ||||||||||||||| | | |||||||||| || |||||||| || | |||||
Sbjct 92 TGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 36
>seq1212451
Length=387
Score = 132 bits (146), Expect = 1e-28
Identities = 164/220 (75%), Gaps = 12/220 (5%)
Strand=Plus/Plus
Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337
||||||||||||| ||| |||||||| |||||| || |||||| ||| || | ||
Sbjct 1 AGCAGTGGGGAATCTTGGACAATGGGTGAAAGCCCAATCCAGCAATATCGCATGCGTGAA 60
Query 338 GAAGGCCTTCGGGTC--GTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAG 393
||||| | | || ||| |||||| || || || | || ||||| |||| |||
Sbjct 61 GAAGGGCAATGCCTCTTGTACAGCTCTTTCGTCGAGTGCGTGATCATGACATTACTCGAG 120
Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC-----GTAGG--GGGCT 446
|| |||||||||||||||| |||||||| |||||||||| || || || ||||
Sbjct 121 GAAGAAGCCCCGGCTAACTCCGTGCCAGTAGCCGCGGTATGACGGGCGGTGGGGCGGGCA 180
Query 447 AGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGG 486
|| ||| | |||||| ||| |||||||||||| ||||||
Sbjct 181 AGTGTTCTTCGGAATGACT-GGGCGTAAAGGGCACGTAGG 219
>seq1508883
Length=202
Score = 98.7 bits (108), Expect = 3e-18
Identities = 89/111 (80%), Gaps = 1/111 (1%)
Strand=Plus/Minus
Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 199 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 140
Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||||||||| | | | |||||||| ||| || ||||| || | |||||
Sbjct 139 GTTATCCGGAATGA-TTGTGCGTAAAGAGTGTGTCGGTGGCTTTTCAAGTC 90
>seq966087
Length=2119
Score = 98.7 bits (108), Expect = 3e-18
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 242 TGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATG 301
||| |||||||||||| ||| |||||||||||||||||||||||||||| || | |||||
Sbjct 1 TGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATG 60
Query 302 GGCAAAAGCCTG 313
||| ||||||||
Sbjct 61 GGCGAAAGCCTG 72
>seq882205
Length=2375
Score = 86.0 bits (94), Expect = 2e-14
Identities = 104/139 (75%), Gaps = 6/139 (4%)
Strand=Plus/Minus
Query 353 GTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAA 410
|||||||||| | || || | || ||||| ||| ||||| ||||||||||| ||
Sbjct 1372 GTAAAGCTCTTTTGTCGAGTGTGCAATCATGACATGACTCGAGGAAGAAGCCCCGGCAAA 1313
Query 411 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGC 470
|| ||||| | || | | ||||| || |||||| || ||| | || ||| ||| ||||
Sbjct 1312 CTCCGTGCGAACAACTGTGGTAAGAC---GGGGGCAAGTGTTCTTCGAAATGACT-GGGC 1257
Query 471 GTAAAGGGTGCGTAGGTGG 489
||||||||| |||||| ||
Sbjct 1256 GTAAAGGGTACGTAGGCGG 1238
>seq165799
Length=1184
Score = 82.4 bits (90), Expect = 2e-13
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456
|||||||||||||||| |||||||||||||||||||| || |||||| || ||| | |
Sbjct 218 GAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTGTTCTTC 159
Query 457 GGAATTACTG 466
||||| ||||
Sbjct 158 GGAATGACTG 149
>seq94780
Length=20738
Score = 82.4 bits (90), Expect = 2e-13
Identities = 67/80 (84%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 411 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGC 470
|| |||||||||||||||||||| ||| |||||| || ||| | |||||| ||| ||||
Sbjct 20738 CTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACT-GGGC 20680
Query 471 GTAAAGGGTGCGTAGGTGGT 490
|||||||| |||||| |||
Sbjct 20679 GTAAAGGGCACGTAGGCGGT 20660
>seq1859305
Length=241
Score = 80.6 bits (88), Expect = 8e-13
Identities = 80/103 (78%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 336 ATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAG 393
|||| |||| |||||||| || ||| | ||| ||||| | ||||||||| ||||
Sbjct 137 ATGACTGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAG 196
Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436
|| |||| ||||||||| ||||||||||||||||||| ||
Sbjct 197 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGAC 239
>seq1123124
Length=2189
Score = 80.6 bits (88), Expect = 8e-13
Identities = 85/111 (77%), Gaps = 1/111 (1%)
Strand=Plus/Minus
Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449
|||||| |||| ||||||||| |||||||| |||||||||| || ||| || |||
Sbjct 2187 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCTGCCGCGGTAAGACAGAGGATGCAAGC 2128
Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||||||||| | | ||||||| | | |||||||| || |||||
Sbjct 2127 GTTATCCGGAATGA-TTGGGCGTACAACATTTGTAGGTGGCTTTACAAGTC 2078
>seq67162
Length=11945
Score = 80.6 bits (88), Expect = 8e-13
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281
|||||| ||||| |||||| ||| |||||||||||| ||| |||||||| | ||||||||
Sbjct 1921 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACAGAAGGCAGCA 1862
Query 282 GTGG 285
||||
Sbjct 1861 GTGG 1858
>seq857911
Length=7183
Score = 75.2 bits (82), Expect = 3e-11
Identities = 50/56 (89%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGC 215
|||||||||||||||||||||| ||| || |||||||| ||||| ||||||||||
Sbjct 3461 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCATGGCGATGATCAGTAGC 3516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1466481354624
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