Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq795743 206 6e-51 seq94780 192 1e-46 seq77026 183 7e-44 seq1508883 129 1e-27 seq832032 120 7e-25 seq817092 120 7e-25 seq831958 104 6e-20 seq829586 104 6e-20 seq1441153 100 7e-19 seq1212451 96.9 8e-18 seq59074 95.1 3e-17 seq882205 87.8 4e-15 seq1123124 86.0 1e-14 seq165799 82.4 2e-13 seq851123 73.4 9e-11 seq91404 73.4 9e-11 >seq795743 Length=230 Score = 206 bits (228), Expect = 6e-51 Identities = 149/172 (87%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 ||||||||| | ||||| | |||||||||| ||||||||||| |||||| |||||| || Sbjct 26 CTAGAGTGCGGTAGGGGAGATTGGAATTCCTGGTGTAGCGGTGGAATGCGCAGATATCAG 85 Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 |||||||||| |||||||||| | | |||| | ||||||||| |||||| |||||| Sbjct 86 GAGGAACACCGATGGCGAAGGCAGATCTCTGGGCCGTAACTGACGCTGAGGAGCGAAAGG 145 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 146 GTGGGGAGCAAACAGGCTTAGATACCCTGGTAGTCCACCCCGTAAACGATGA 197 >seq94780 Length=20738 Score = 192 bits (212), Expect = 1e-46 Identities = 234/316 (74%), Gaps = 10/316 (3%) Strand=Plus/Minus Query 26 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCG 85 || |||||||||||||||||||| ||| |||||| || ||| | |||||| |||||||| Sbjct 20738 CTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCG 20679 Query 86 TAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCG-GG 144 ||||||| |||||| ||| | || | ||||||| | | | || | || Sbjct 20678 TAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTC---GCCAAAAAGTGGCGG 20622 Query 145 ACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGT 201 | |||| | ||||| | || || ||||| || || ||||||||| | |||| Sbjct 20621 AATGCTCTCGAAACCAATTCA---CTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGT 20565 Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261 || |||||||| ||||||| | | |||||| ||| |||||||| ||| |||| Sbjct 20564 AGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCC 20505 Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 || ||| ||| || ||||||| |||||||| |||||||||||||||||||||||||| Sbjct 20504 CTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCC 20445 Query 322 ACGCCGTAAACGATGA 337 | |||||||||||||| Sbjct 20444 ATGCCGTAAACGATGA 20429 >seq77026 Length=2228 Score = 183 bits (202), Expect = 7e-44 Identities = 248/339 (73%), Gaps = 15/339 (4%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||||||||| |||||||||||||||| |||||||||||| ||||||| ||| |||| Sbjct 638 ACTTGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCAGCGGTAAGACGGGGGGG--- 694 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| || | || | ||| Sbjct 695 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGCGAATCGGGTAGAAAGTG 754 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || ||| |||| | ||||| | || || ||||| Sbjct 755 AAAGTC---GTCAAAAAGTGTCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAT 808 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 | || |||||||||| | ||||| |||||||| ||||||| | | |||||| ||| Sbjct 809 TGAGGAAAGTGGAATTTCATCTGTAGGGGTGAAATCCGTAGATTTACGAAGGAACGCCAA 868 Query 238 TGGCGAAGGCGGCTTGCTG-GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 |||||||| || || | | || | ||| ||| || ||||||| |||||||| | Sbjct 869 AAGCGAAGGCAACTCTGTGAGTCCCTA-CAGACGCTGGGGTGCGAAAGCATGGGGAGCGA 927 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGAT 335 |||||||||||||||||||||||||| |||||||| ||| Sbjct 928 ACAGGATTAGATACCCTGGTAGTCCATGCCGTAAATGAT 966 >seq1508883 Length=202 Score = 129 bits (142), Expect = 1e-27 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 199 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 140 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | || |||||||| ||| || ||||| || | ||||| | || ||| Sbjct 139 GTTATCCGGAATGATTGTGCGTAAAGAGTGTGTCGGTGGCTTTTCAAGTCCGTCGTAAAA 80 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||| || || ||| | |||||| | ||| |||| | ||||||||| Sbjct 79 TCCCAGGGCTCAGGCCTGGACATGCGGTGGAAACTACCAAGCTGGAGTACGGGAGGGGCA 20 Query 185 AGTGGAATTCCTAGTGTAG 203 |||||||| ||| || Sbjct 19 GAGGGAATTCCCGGTGGAG 1 >seq832032 Length=212 Score = 120 bits (132), Expect = 7e-25 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 68 TGAGGAATAAGCATCGGCTAACTCAGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 127 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 128 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 187 Query 125 GGCTATGGCTCAACCCCGG 143 | | |||||||||| || Sbjct 188 TCCCAAGGCTCAACCCTGG 206 >seq817092 Length=212 Score = 120 bits (132), Expect = 7e-25 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 145 TGAGGAATAAGCATCGGCTAACTCGGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 86 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 85 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 26 Query 125 GGCTATGGCTCAACCCCGG 143 | | |||||||||| || Sbjct 25 TCCCAGGGCTCAACCCTGG 7 >seq831958 Length=214 Score = 104 bits (114), Expect = 6e-20 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||||||||| |||||||| |||| ||||||| Sbjct 207 ACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA 148 Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCCGGTGCCGCAGCAAAC 382 |||||||||||| |||||||||| | | ||| | | | | |||| | ||| ||| Sbjct 147 GCCGTAAACGATCGATACTAGGTG-CTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAAC 89 Query 383 GCAATAAGTATTCCACCTGGGGAGTA 408 || ||||||| || ||||||||||| Sbjct 88 GCGTTAAGTATCCCGCCTGGGGAGTA 63 >seq829586 Length=214 Score = 104 bits (114), Expect = 6e-20 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||||||||| |||||||| |||| ||||||| Sbjct 8 ACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA 67 Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCCGGTGCCGCAGCAAAC 382 |||||||||||| |||||||||| | | ||| | | | | |||| | ||| ||| Sbjct 68 GCCGTAAACGATTGATACTAGGTG-CTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAAC 126 Query 383 GCAATAAGTATTCCACCTGGGGAGTA 408 || ||||||| || ||||||||||| Sbjct 127 GCGTTAAGTATCCCGCCTGGGGAGTA 152 >seq1441153 Length=262 Score = 100 bits (110), Expect = 7e-19 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||| ||||| |||||| || ||| || |||||||||| |||| | Sbjct 101 CGGCTAACTCTGTGCCACCAGCCTCGGTAAGACAGAGGATGCAAGCGTTATCCAGAATGA 160 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||| | |||||||| || | ||||| | || ||| | |||||||||| Sbjct 161 TTGGGCGTAAAGCATTTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCATGGCTCAAC 220 Query 139 CCCGG 143 || || Sbjct 221 CCTGG 225 >seq1212451 Length=387 Score = 96.9 bits (106), Expect = 8e-18 Identities = 86/107 (80%), Gaps = 7/107 (7%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC-----GTAG 55 |||| ||||| |||||||||||||||| |||||||| |||||||||| || || | Sbjct 113 TACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGTAGCCGCGGTATGACGGGCGGTGG 172 Query 56 G--GGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100 | |||| || ||| | |||||| ||||||||||||||| |||||| Sbjct 173 GGCGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGG 219 >seq59074 Length=14123 Score = 95.1 bits (104), Expect = 3e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 80 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 21 Query 62 AGCGTTATCCGGAATTACTG 81 || ||| | |||||| |||| Sbjct 20 AGTGTTCTTCGGAATGACTG 1 >seq882205 Length=2375 Score = 87.8 bits (96), Expect = 4e-15 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| ||||||||||| |||| ||||| | || | | ||||| ||| ||||| Sbjct 1336 ACTCGAGGAAGAAGCCCCGGCAAACTCCGTGCGAACAACTGTGGTAAGACG---GGGGCA 1280 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGG 103 || ||| | || ||| |||||||||||||||| |||||| || Sbjct 1279 AGTGTTCTTCGAAATGACTGGGCGTAAAGGGTACGTAGGCGG 1238 >seq1123124 Length=2189 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| |||||||| |||||||||| || ||| || ||| Sbjct 2187 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCTGCCGCGGTAAGACAGAGGATGCAAGC 2128 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 |||||||||||| | |||||||| | | |||||||| || ||||| Sbjct 2127 GTTATCCGGAATGATTGGGCGTACAACATTTGTAGGTGGCTTTACAAGTC 2078 >seq165799 Length=1184 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 |||||||||||||||| |||||||||||||||||||| || |||||| || ||| | | Sbjct 218 GAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTGTTCTTC 159 Query 72 GGAATTACTG 81 ||||| |||| Sbjct 158 GGAATGACTG 149 >seq851123 Length=7433 Score = 73.4 bits (80), Expect = 9e-11 Identities = 76/98 (78%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT---AGGGGGCTA 62 ||||| ||||||||| |||||| |||||||| || ||||| ||| ||||||| | Sbjct 6612 GAGGAAGAAGCCCCGACTAACTCTATGCCAGCAACCATGGTAAGACGGGGAAGGGGGCAA 6553 Query 63 GCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100 | ||| | ||||| ||||| ||||||||| |||||| Sbjct 6552 GTGTTCTTTGGAATGACTGG-CGTAAAGGGAACGTAGG 6516 >seq91404 Length=5235 Score = 73.4 bits (80), Expect = 9e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 51 ||| ||||| |||||||||||||||| |||||||||||||||||||| || Sbjct 1109 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGAC 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178198695168