Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq795743 206 6e-51
seq94780 192 1e-46
seq77026 183 7e-44
seq1508883 129 1e-27
seq832032 120 7e-25
seq817092 120 7e-25
seq831958 104 6e-20
seq829586 104 6e-20
seq1441153 100 7e-19
seq1212451 96.9 8e-18
seq59074 95.1 3e-17
seq882205 87.8 4e-15
seq1123124 86.0 1e-14
seq165799 82.4 2e-13
seq851123 73.4 9e-11
seq91404 73.4 9e-11
>seq795743
Length=230
Score = 206 bits (228), Expect = 6e-51
Identities = 149/172 (87%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225
||||||||| | ||||| | |||||||||| ||||||||||| |||||| |||||| ||
Sbjct 26 CTAGAGTGCGGTAGGGGAGATTGGAATTCCTGGTGTAGCGGTGGAATGCGCAGATATCAG 85
Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285
|||||||||| |||||||||| | | |||| | ||||||||| |||||| ||||||
Sbjct 86 GAGGAACACCGATGGCGAAGGCAGATCTCTGGGCCGTAACTGACGCTGAGGAGCGAAAGG 145
Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
|||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 146 GTGGGGAGCAAACAGGCTTAGATACCCTGGTAGTCCACCCCGTAAACGATGA 197
>seq94780
Length=20738
Score = 192 bits (212), Expect = 1e-46
Identities = 234/316 (74%), Gaps = 10/316 (3%)
Strand=Plus/Minus
Query 26 CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCG 85
|| |||||||||||||||||||| ||| |||||| || ||| | |||||| ||||||||
Sbjct 20738 CTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCG 20679
Query 86 TAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCG-GG 144
||||||| |||||| ||| | || | ||||||| | | | || | ||
Sbjct 20678 TAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTC---GCCAAAAAGTGGCGG 20622
Query 145 ACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGT 201
| |||| | ||||| | || || ||||| || || ||||||||| | ||||
Sbjct 20621 AATGCTCTCGAAACCAATTCA---CTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGT 20565
Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261
|| |||||||| ||||||| | | |||||| ||| |||||||| ||| ||||
Sbjct 20564 AGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCC 20505
Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321
|| ||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 20504 CTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCC 20445
Query 322 ACGCCGTAAACGATGA 337
| ||||||||||||||
Sbjct 20444 ATGCCGTAAACGATGA 20429
>seq77026
Length=2228
Score = 183 bits (202), Expect = 7e-44
Identities = 248/339 (73%), Gaps = 15/339 (4%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||||||||| |||||||||||||||| |||||||||||| ||||||| ||| ||||
Sbjct 638 ACTTGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCAGCGGTAAGACGGGGGGG--- 694
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||||||||||||||| |||||| || | || | |||
Sbjct 695 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGCGAATCGGGTAGAAAGTG 754
Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177
|||| | | | || ||| |||| | ||||| | || || |||||
Sbjct 755 AAAGTC---GTCAAAAAGTGTCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAT 808
Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237
| || |||||||||| | ||||| |||||||| ||||||| | | |||||| |||
Sbjct 809 TGAGGAAAGTGGAATTTCATCTGTAGGGGTGAAATCCGTAGATTTACGAAGGAACGCCAA 868
Query 238 TGGCGAAGGCGGCTTGCTG-GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296
|||||||| || || | | || | ||| ||| || ||||||| |||||||| |
Sbjct 869 AAGCGAAGGCAACTCTGTGAGTCCCTA-CAGACGCTGGGGTGCGAAAGCATGGGGAGCGA 927
Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGAT 335
|||||||||||||||||||||||||| |||||||| |||
Sbjct 928 ACAGGATTAGATACCCTGGTAGTCCATGCCGTAAATGAT 966
>seq1508883
Length=202
Score = 129 bits (142), Expect = 1e-27
Identities = 148/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 199 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 140
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | || |||||||| ||| || ||||| || | ||||| | || |||
Sbjct 139 GTTATCCGGAATGATTGTGCGTAAAGAGTGTGTCGGTGGCTTTTCAAGTCCGTCGTAAAA 80
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||| || || ||| | |||||| | ||| |||| | |||||||||
Sbjct 79 TCCCAGGGCTCAGGCCTGGACATGCGGTGGAAACTACCAAGCTGGAGTACGGGAGGGGCA 20
Query 185 AGTGGAATTCCTAGTGTAG 203
|||||||| ||| ||
Sbjct 19 GAGGGAATTCCCGGTGGAG 1
>seq832032
Length=212
Score = 120 bits (132), Expect = 7e-25
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 68 TGAGGAATAAGCATCGGCTAACTCAGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 127
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || | ||||| | || |||
Sbjct 128 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 187
Query 125 GGCTATGGCTCAACCCCGG 143
| | |||||||||| ||
Sbjct 188 TCCCAAGGCTCAACCCTGG 206
>seq817092
Length=212
Score = 120 bits (132), Expect = 7e-25
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 145 TGAGGAATAAGCATCGGCTAACTCGGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 86
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || | ||||| | || |||
Sbjct 85 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 26
Query 125 GGCTATGGCTCAACCCCGG 143
| | |||||||||| ||
Sbjct 25 TCCCAGGGCTCAACCCTGG 7
>seq831958
Length=214
Score = 104 bits (114), Expect = 6e-20
Identities = 112/146 (77%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323
|||||||||||| ||||||| |||||||||| |||||||| |||| |||||||
Sbjct 207 ACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA 148
Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCCGGTGCCGCAGCAAAC 382
|||||||||||| |||||||||| | | ||| | | | | |||| | ||| |||
Sbjct 147 GCCGTAAACGATCGATACTAGGTG-CTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAAC 89
Query 383 GCAATAAGTATTCCACCTGGGGAGTA 408
|| ||||||| || |||||||||||
Sbjct 88 GCGTTAAGTATCCCGCCTGGGGAGTA 63
>seq829586
Length=214
Score = 104 bits (114), Expect = 6e-20
Identities = 112/146 (77%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323
|||||||||||| ||||||| |||||||||| |||||||| |||| |||||||
Sbjct 8 ACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA 67
Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCCGGTGCCGCAGCAAAC 382
|||||||||||| |||||||||| | | ||| | | | | |||| | ||| |||
Sbjct 68 GCCGTAAACGATTGATACTAGGTG-CTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAAC 126
Query 383 GCAATAAGTATTCCACCTGGGGAGTA 408
|| ||||||| || |||||||||||
Sbjct 127 GCGTTAAGTATCCCGCCTGGGGAGTA 152
>seq1441153
Length=262
Score = 100 bits (110), Expect = 7e-19
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78
||||||||| |||||| ||||| |||||| || ||| || |||||||||| |||| |
Sbjct 101 CGGCTAACTCTGTGCCACCAGCCTCGGTAAGACAGAGGATGCAAGCGTTATCCAGAATGA 160
Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
||||||||||| | |||||||| || | ||||| | || ||| | ||||||||||
Sbjct 161 TTGGGCGTAAAGCATTTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCCATGGCTCAAC 220
Query 139 CCCGG 143
|| ||
Sbjct 221 CCTGG 225
>seq1212451
Length=387
Score = 96.9 bits (106), Expect = 8e-18
Identities = 86/107 (80%), Gaps = 7/107 (7%)
Strand=Plus/Plus
Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC-----GTAG 55
|||| ||||| |||||||||||||||| |||||||| |||||||||| || || |
Sbjct 113 TACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGTAGCCGCGGTATGACGGGCGGTGG 172
Query 56 G--GGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100
| |||| || ||| | |||||| ||||||||||||||| ||||||
Sbjct 173 GGCGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGG 219
>seq59074
Length=14123
Score = 95.1 bits (104), Expect = 3e-17
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 80 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 21
Query 62 AGCGTTATCCGGAATTACTG 81
|| ||| | |||||| ||||
Sbjct 20 AGTGTTCTTCGGAATGACTG 1
>seq882205
Length=2375
Score = 87.8 bits (96), Expect = 4e-15
Identities = 81/102 (79%), Gaps = 3/102 (3%)
Strand=Plus/Minus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| ||||||||||| |||| ||||| | || | | ||||| ||| |||||
Sbjct 1336 ACTCGAGGAAGAAGCCCCGGCAAACTCCGTGCGAACAACTGTGGTAAGACG---GGGGCA 1280
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGG 103
|| ||| | || ||| |||||||||||||||| |||||| ||
Sbjct 1279 AGTGTTCTTCGAAATGACTGGGCGTAAAGGGTACGTAGGCGG 1238
>seq1123124
Length=2189
Score = 86.0 bits (94), Expect = 1e-14
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| |||||||| |||||||||| || ||| || |||
Sbjct 2187 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCTGCCGCGGTAAGACAGAGGATGCAAGC 2128
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114
|||||||||||| | |||||||| | | |||||||| || |||||
Sbjct 2127 GTTATCCGGAATGATTGGGCGTACAACATTTGTAGGTGGCTTTACAAGTC 2078
>seq165799
Length=1184
Score = 82.4 bits (90), Expect = 2e-13
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71
|||||||||||||||| |||||||||||||||||||| || |||||| || ||| | |
Sbjct 218 GAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTGTTCTTC 159
Query 72 GGAATTACTG 81
||||| ||||
Sbjct 158 GGAATGACTG 149
>seq851123
Length=7433
Score = 73.4 bits (80), Expect = 9e-11
Identities = 76/98 (78%), Gaps = 4/98 (4%)
Strand=Plus/Minus
Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT---AGGGGGCTA 62
||||| ||||||||| |||||| |||||||| || ||||| ||| ||||||| |
Sbjct 6612 GAGGAAGAAGCCCCGACTAACTCTATGCCAGCAACCATGGTAAGACGGGGAAGGGGGCAA 6553
Query 63 GCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100
| ||| | ||||| ||||| ||||||||| ||||||
Sbjct 6552 GTGTTCTTTGGAATGACTGG-CGTAAAGGGAACGTAGG 6516
>seq91404
Length=5235
Score = 73.4 bits (80), Expect = 9e-11
Identities = 46/50 (92%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 51
||| ||||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct 1109 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGAC 1060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178198695168
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