Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq72279 320 3e-85
seq676 167 4e-39
seq149897 147 4e-33
seq39360 122 2e-25
seq2027124 111 3e-22
seq2029915 87.8 3e-15
seq839355 77.0 6e-12
>seq72279
Length=5110
Score = 320 bits (354), Expect = 3e-85
Identities = 227/259 (88%), Gaps = 1/259 (0%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129
|||||||||||||||||||| | | || ||| |||||||||||||||||||||||||||
Sbjct 863 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 922
Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 923 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 982
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||
Sbjct 983 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 1042
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
|||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1043 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 1102
Query 310 TACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 1103 TACGTCCCTGCCCTTTGTA 1121
>seq676
Length=222
Score = 167 bits (184), Expect = 4e-39
Identities = 164/211 (78%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 121 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAAC 180
|||||||||||||||||||||||| | |||||||||||| |||||||||| | || |
Sbjct 1 CAGGTCTGTGATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATC 60
Query 181 GAGTTCA---TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGG 237
| | | | ||| ||| |||| ||||||| | | || | | ||||| |||
Sbjct 61 GTGCATACTGTTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGG 120
Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297
|||| | |||||| ||||||||| | | |||||||||| || |||||||| | ||||| |
Sbjct 121 GGATTGGGCATTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTA 180
Query 298 GCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| |||||||||||||||||||||||||||
Sbjct 181 GCTTGCGTTGATTACGTCCCTGCCCTTTGTA 211
>seq149897
Length=976
Score = 147 bits (162), Expect = 4e-33
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167
||||||||| |||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 976 TTTGAGGCATTAACAGGTGTGTGATGCCCTTAGATATTCTGGGCCGCACGCGCGCNNNNN 917
Query 168 TGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227
| |||||||| || ||||| || ||| | ||||||||| ||| |
Sbjct 916 NNNTGTATTCAACGAGTATATAGGCTTGGACGACAGGCCCGGGTAATCTATGGAAATTTC 857
Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287
|| || |||||||||| ||||||||||||||||||||| |||
Sbjct 856 ATCATGATGGGGATAGANNNNNNNNNNNNNNNNNNTTCAACGAGGAATGCCTAGTATGCG 797
Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| ||||||| |||||||||||||||||||
Sbjct 796 CAAGTCATTAGCTCGCGTTGCCTACGTCCCTGCCCTTTGTA 756
>seq39360
Length=237
Score = 122 bits (134), Expect = 2e-25
Identities = 89/102 (87%), Gaps = 1/102 (1%)
Strand=Plus/Minus
Query 70 GGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
||||||||||| |||||||| | | || ||| ||||||||||||||||||||||| ||
Sbjct 110 GGCTTCTTAGATGGACTATCCGAGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTGTG 51
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170
|||| ||||||||||||||||| |||||| |||||||||||
Sbjct 50 TGATACCCTTAGATGTTCTGGGTTGCACGCACGCTACACTGA 9
>seq2027124
Length=245
Score = 111 bits (122), Expect = 3e-22
Identities = 106/138 (77%), Gaps = 1/138 (1%)
Strand=Plus/Minus
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||||
Sbjct 239 CCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTG 180
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| |||||||||||||||||||||| || |||| | | |||||| |
Sbjct 179 CAATTGNNNNNNNNNNNCGAGGAATGCCTAGTAAGCGCGAGTAATCATCTCACGTTGACT 120
Query 311 ACGTCCCTGCCCTTTGTA 328
|| ||||| |||||||||
Sbjct 119 ACATCCCT-CCCTTTGTA 103
>seq2029915
Length=225
Score = 87.8 bits (96), Expect = 3e-15
Identities = 102/137 (74%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 122 AGGTCTGTGATGCCCTTAGATG---TTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA 178
|||| ||||||||||||||||| |||| |||| ||| | | ||||| ||| | ||
Sbjct 88 AGGTGTGTGATGCCCTTAGATGTTTTTCTAGGCCACACACACACTACATTGATTTATTCA 147
Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGG 238
|||||| || |||||||| ||| | ||||||||| ||| | | ||| ||||
Sbjct 148 ACGAGTATATAGACTTGGCCGAGAGGCCCATGTAATCTTGGGAAATTTCATTGTGATGGG 207
Query 239 GATAGAGCATTGCAATT 255
|||||| ||||||||||
Sbjct 208 GATAGATCATTGCAATT 224
>seq839355
Length=3111
Score = 77.0 bits (84), Expect = 6e-12
Identities = 80/103 (78%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCA--ATAACAGGTCT 127
|||| ||||||||| |||| | | || ||||| ||||||| | | |||||| |||
Sbjct 742 GCTTTTTAGAGGGAGTATCATCATTTAGGCGATGTAAGTTTGTGTGATAATAACAAGTCG 801
Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170
||||||||| ||||||||||||||||| | ||||| ||||
Sbjct 802 ACGATGCCCTTCGATGTTCTGGGCCGCACATGTGCTACTCTGA 844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 927518121728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |