Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq72279 320 3e-85 seq676 167 4e-39 seq149897 147 4e-33 seq39360 122 2e-25 seq2027124 111 3e-22 seq2029915 87.8 3e-15 seq839355 77.0 6e-12 >seq72279 Length=5110 Score = 320 bits (354), Expect = 3e-85 Identities = 227/259 (88%), Gaps = 1/259 (0%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||||| | | || ||| ||||||||||||||||||||||||||| Sbjct 863 GCTTCTTAGAGGGACTATCGCCGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTCTGT 922 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 923 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATA 982 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| |||| Sbjct 983 GCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATT 1042 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1043 GCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGAC 1102 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 1103 TACGTCCCTGCCCTTTGTA 1121 >seq676 Length=222 Score = 167 bits (184), Expect = 4e-39 Identities = 164/211 (78%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 121 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAAC 180 |||||||||||||||||||||||| | |||||||||||| |||||||||| | || | Sbjct 1 CAGGTCTGTGATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATC 60 Query 181 GAGTTCA---TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGG 237 | | | | ||| ||| |||| ||||||| | | || | | ||||| ||| Sbjct 61 GTGCATACTGTTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGG 120 Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 |||| | |||||| ||||||||| | | |||||||||| || |||||||| | ||||| | Sbjct 121 GGATTGGGCATTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTA 180 Query 298 GCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||||||||||||||| Sbjct 181 GCTTGCGTTGATTACGTCCCTGCCCTTTGTA 211 >seq149897 Length=976 Score = 147 bits (162), Expect = 4e-33 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 108 TTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACAC 167 ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 976 TTTGAGGCATTAACAGGTGTGTGATGCCCTTAGATATTCTGGGCCGCACGCGCGCNNNNN 917 Query 168 TGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT 227 | |||||||| || ||||| || ||| | ||||||||| ||| | Sbjct 916 NNNTGTATTCAACGAGTATATAGGCTTGGACGACAGGCCCGGGTAATCTATGGAAATTTC 857 Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 || || |||||||||| ||||||||||||||||||||| ||| Sbjct 856 ATCATGATGGGGATAGANNNNNNNNNNNNNNNNNNTTCAACGAGGAATGCCTAGTATGCG 797 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||| ||||||||||||||||||| Sbjct 796 CAAGTCATTAGCTCGCGTTGCCTACGTCCCTGCCCTTTGTA 756 >seq39360 Length=237 Score = 122 bits (134), Expect = 2e-25 Identities = 89/102 (87%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 70 GGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||| |||||||| | | || ||| ||||||||||||||||||||||| || Sbjct 110 GGCTTCTTAGATGGACTATCCGAGTTTAGGCGACGGAAGTTTGAGGCAATAACAGGTGTG 51 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||||||||||| |||||| ||||||||||| Sbjct 50 TGATACCCTTAGATGTTCTGGGTTGCACGCACGCTACACTGA 9 >seq2027124 Length=245 Score = 111 bits (122), Expect = 3e-22 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | ||||||||||| ||| | ||||| |||||||||| ||||| Sbjct 239 CCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTG 180 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| |||||||||||||||||||||| || |||| | | |||||| | Sbjct 179 CAATTGNNNNNNNNNNNCGAGGAATGCCTAGTAAGCGCGAGTAATCATCTCACGTTGACT 120 Query 311 ACGTCCCTGCCCTTTGTA 328 || ||||| ||||||||| Sbjct 119 ACATCCCT-CCCTTTGTA 103 >seq2029915 Length=225 Score = 87.8 bits (96), Expect = 3e-15 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 122 AGGTCTGTGATGCCCTTAGATG---TTCTGGGCCGCACGCGCGCTACACTGACAGAGCCA 178 |||| ||||||||||||||||| |||| |||| ||| | | ||||| ||| | || Sbjct 88 AGGTGTGTGATGCCCTTAGATGTTTTTCTAGGCCACACACACACTACATTGATTTATTCA 147 Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGG 238 |||||| || |||||||| ||| | ||||||||| ||| | | ||| |||| Sbjct 148 ACGAGTATATAGACTTGGCCGAGAGGCCCATGTAATCTTGGGAAATTTCATTGTGATGGG 207 Query 239 GATAGAGCATTGCAATT 255 |||||| |||||||||| Sbjct 208 GATAGATCATTGCAATT 224 >seq839355 Length=3111 Score = 77.0 bits (84), Expect = 6e-12 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCA--ATAACAGGTCT 127 |||| ||||||||| |||| | | || ||||| ||||||| | | |||||| ||| Sbjct 742 GCTTTTTAGAGGGAGTATCATCATTTAGGCGATGTAAGTTTGTGTGATAATAACAAGTCG 801 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||||||||| ||||||||||||||||| | ||||| |||| Sbjct 802 ACGATGCCCTTCGATGTTCTGGGCCGCACATGTGCTACTCTGA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927518121728