Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq2071931 237 3e-60
seq287375 161 2e-37
seq2071107 129 1e-27
seq818547 96.9 6e-18
seq775010 75.2 2e-11
>seq2071931
Length=217
Score = 237 bits (262), Expect = 3e-60
Identities = 151/163 (93%), Gaps = 1/163 (1%)
Strand=Plus/Minus
Query 158 AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATT 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATT 158
Query 218 CCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTT-TACGAGATAGTTGAATTGATAGTG 276
||||||||||||||||||||||||||||||||||| || | |||||| |||||||||
Sbjct 157 CCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTGTATGTGATAGTCAGTTTGATAGTG 98
Query 277 GAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319
||| |||||||||| | ||||||||||||||||||||||||
Sbjct 97 GAAGTCTCTGGAAATGGACGCCATAGCGGGTGATAGCCCCGTA 55
>seq287375
Length=2196
Score = 161 bits (178), Expect = 2e-37
Identities = 197/262 (75%), Gaps = 14/262 (5%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||||| |||||||||||||||| | || ||| |||||||| || |||||||
Sbjct 1982 AGGGCACACGGTGGATGCCTTGGCGCTAGGAGCCGACGAAGGACGCAGCGAACTGCGATA 1923
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
||| ||||||| | | || ||| |||||||||| ||| ||||||||||| ||||| |
Sbjct 1922 AGCCTCGGGGAGCG-GTAAGCACGCTTTGATCCGGGGATCTCCGAATGGGGCAACCCACC 1864
Query 121 --CCTT--TGGGTCATTGCAT-----GCTGAATACATAGGT-ATG-CAAAGCGAACGCGG 169
|| | |||| || | || |||||||||||||| ||| | || || |||
Sbjct 1863 ATCCGTAATGGG--ATGGTATCCTTCACTGAATACATAGGTGATGAGAGGGCAGACCCGG 1806
Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229
||||||||||||||||||||| | ||||| ||||| ||| | |||||| |||||||
Sbjct 1805 TGAACTGAAACATCTAAGTAGCCGGAGGAAGAGAAAACAATAGTGATTCCGTCAGTAGTG 1746
Query 230 GCGAGCGAAATGGGATGAGCCT 251
||||||||| ||| ||||||
Sbjct 1745 GCGAGCGAACGCGGAAGAGCCT 1724
>seq2071107
Length=323
Score = 129 bits (142), Expect = 1e-27
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60
|| ||| | ||||||||||||||| | | |||||||||| ||||| ||||| ||||| |
Sbjct 136 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAA 77
Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120
|||| |||||||| ||||||| ||||||||||| |||| || |||||||| ||||| ||
Sbjct 76 AGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGC 17
Query 121 C 121
|
Sbjct 16 C 16
>seq818547
Length=203
Score = 96.9 bits (106), Expect = 6e-18
Identities = 94/120 (78%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191
||| |||||||| ||| | | |||| || ||| || |||||||||| ||| ||||||
Sbjct 57 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACGTCTTAGTAGC 116
Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
| ||||||||||| ||| | ||||||| ||||| ||||||| |||||||| |||||
Sbjct 117 TAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCTAAATGGGAGTAGCCT 176
>seq775010
Length=222
Score = 75.2 bits (82), Expect = 2e-11
Identities = 61/74 (82%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237
||||||| |||||| ||||||||||| ||| | ||||||| ||||| |||||||||
Sbjct 1 AACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGA 60
Query 238 AATGGGATGAGCCT 251
||||||| |||||
Sbjct 61 AATGGGAGCAGCCT 74
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899316557216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |