Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2071931 237 3e-60 seq287375 161 2e-37 seq2071107 129 1e-27 seq818547 96.9 6e-18 seq775010 75.2 2e-11 >seq2071931 Length=217 Score = 237 bits (262), Expect = 3e-60 Identities = 151/163 (93%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 158 AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATT 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217 AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATT 158 Query 218 CCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTT-TACGAGATAGTTGAATTGATAGTG 276 ||||||||||||||||||||||||||||||||||| || | |||||| ||||||||| Sbjct 157 CCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTGTATGTGATAGTCAGTTTGATAGTG 98 Query 277 GAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 ||| |||||||||| | |||||||||||||||||||||||| Sbjct 97 GAAGTCTCTGGAAATGGACGCCATAGCGGGTGATAGCCCCGTA 55 >seq287375 Length=2196 Score = 161 bits (178), Expect = 2e-37 Identities = 197/262 (75%), Gaps = 14/262 (5%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| |||||||||||||||| | || ||| |||||||| || ||||||| Sbjct 1982 AGGGCACACGGTGGATGCCTTGGCGCTAGGAGCCGACGAAGGACGCAGCGAACTGCGATA 1923 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 ||| ||||||| | | || ||| |||||||||| ||| ||||||||||| ||||| | Sbjct 1922 AGCCTCGGGGAGCG-GTAAGCACGCTTTGATCCGGGGATCTCCGAATGGGGCAACCCACC 1864 Query 121 --CCTT--TGGGTCATTGCAT-----GCTGAATACATAGGT-ATG-CAAAGCGAACGCGG 169 || | |||| || | || |||||||||||||| ||| | || || ||| Sbjct 1863 ATCCGTAATGGG--ATGGTATCCTTCACTGAATACATAGGTGATGAGAGGGCAGACCCGG 1806 Query 170 CGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTG 229 ||||||||||||||||||||| | ||||| ||||| ||| | |||||| ||||||| Sbjct 1805 TGAACTGAAACATCTAAGTAGCCGGAGGAAGAGAAAACAATAGTGATTCCGTCAGTAGTG 1746 Query 230 GCGAGCGAAATGGGATGAGCCT 251 ||||||||| ||| |||||| Sbjct 1745 GCGAGCGAACGCGGAAGAGCCT 1724 >seq2071107 Length=323 Score = 129 bits (142), Expect = 1e-27 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | | |||||||||| ||||| ||||| ||||| | Sbjct 136 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAA 77 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||||| ||||||| ||||||||||| |||| || |||||||| ||||| || Sbjct 76 AGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGC 17 Query 121 C 121 | Sbjct 16 C 16 >seq818547 Length=203 Score = 96.9 bits (106), Expect = 6e-18 Identities = 94/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 133 TGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGC 191 ||| |||||||| ||| | | |||| || ||| || |||||||||| ||| |||||| Sbjct 57 TGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACGTCTTAGTAGC 116 Query 192 TGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||||||||| ||| | ||||||| ||||| ||||||| |||||||| ||||| Sbjct 117 TAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCTAAATGGGAGTAGCCT 176 >seq775010 Length=222 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 ||||||| |||||| ||||||||||| ||| | ||||||| ||||| ||||||||| Sbjct 1 AACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGA 60 Query 238 AATGGGATGAGCCT 251 ||||||| ||||| Sbjct 61 AATGGGAGCAGCCT 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899316557216